Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   TQH59_RS15185 Genome accession   NZ_CP140708
Coordinates   3041359..3043437 (-) Length   692 a.a.
NCBI ID   WP_333640605.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3036359..3048437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS15170 (TQH59_15170) - 3038825..3039664 (-) 840 WP_333640602.1 hypothetical protein -
  TQH59_RS15175 (TQH59_15175) aroB 3039672..3040757 (-) 1086 WP_333640603.1 3-dehydroquinate synthase -
  TQH59_RS15180 (TQH59_15180) - 3040788..3041270 (-) 483 WP_333642434.1 shikimate kinase -
  TQH59_RS15185 (TQH59_15185) pilQ 3041359..3043437 (-) 2079 WP_333640605.1 type IV pilus secretin PilQ Machinery gene
  TQH59_RS15190 (TQH59_15190) pilP 3043457..3043984 (-) 528 WP_333640607.1 pilus assembly protein PilP Machinery gene
  TQH59_RS15195 (TQH59_15195) pilO 3043984..3044706 (-) 723 WP_279731419.1 type 4a pilus biogenesis protein PilO Machinery gene
  TQH59_RS15200 (TQH59_15200) pilN 3044703..3045359 (-) 657 WP_168158668.1 PilN domain-containing protein Machinery gene
  TQH59_RS15205 (TQH59_15205) pilM 3045359..3046417 (-) 1059 WP_201701769.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75088.21 Da        Isoelectric Point: 5.2228

>NTDB_id=915092 TQH59_RS15185 WP_333640605.1 3041359..3043437(-) (pilQ) [Acinetobacter johnsonii strain FAHZZU3567hy]
MKNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIAVATAEASTVDVTSDAQRSRLTVNLVDAGAFTTRVEGNTFILKINSAKPTLATPVAAARSEQGVS
NIGFQRGSDGEGQVVIDLKGGNTPVDVKQQGSKIVVRVLGNKIPAHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKNLDKRRNGNVIWIAPVAELIKSEDDEAKAIAQSIKLAPIQTDYIQLSYAKAADVLKLLEDSRNSKGA
ASNGTAGTDSLALESLLSSRGSVVADLRTNTLIVNDTSQNIDKIRRMIDLLDVAVKQVMVEARIVTAQTDFSRELGIRWS
AQKLNNNPVWGGDFQPSFDLGVDLATGTAGTFNFGLLKISDYMLNLELTALQADGHGEVLSAPKVLTGDKQKAYILRGDQ
IPYQTWSADTGTTTSFVDANLKLEVTPSITPDGRVQMSLKIEKDTVGTLTSAGYLINTNELETNVLVDDGETVVLGGIFD
DIKQNQYEKVPFFGDLPVVGALFKNNTRSSAQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=915092 TQH59_RS15185 WP_333640605.1 3041359..3043437(-) (pilQ) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGAAAAATAGTGCTAAAGATTTTATATTTGGGGATGGTAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGCGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAGATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCACCACAGCCGCAAGCCTATCAGTTGGAACAGCCATCACGTTTGGTT
CTGGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGCAGCATTGCGGTGGCAACGGCTGAAGCAAGTACAGTAGATGT
AACTTCAGATGCACAACGTTCACGTTTAACTGTAAATTTGGTTGATGCCGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGCGAAACCAACGCTAGCAACACCTGTTGCTGCGGCGCGTTCAGAGCAAGGTGTTTCA
AATATTGGATTCCAACGCGGTTCAGATGGTGAAGGCCAAGTTGTCATTGATTTAAAAGGTGGCAATACCCCTGTCGATGT
GAAACAACAAGGCAGTAAAATTGTGGTGCGCGTTTTGGGGAATAAAATTCCTGCACATTTATCACGCCGTCTAAATGTGA
ATGATTTTGCTACGCCTGTATCCACCATTGATGCACAAAATGATGGCAGTAACGGCCTAATCACGATCCAATCGAATGGT
AGTTTTGAATATATGGCTTATCAAGCGGAAGATAAGCTCACCATTAGTTTAAAGCGTCCTGAAGATAAAAATCCAATGAA
GCCTAAAGCGCCAAGTGCTTATACAGGCAAAAAGATTTCTTTAGATTTTCAAGATATTGAAGTGCGACGTGTATTACAGC
TCTTAGCTGATTTTACAGGCATTAACATGGTGGCTTCTGACACTGTACAAGGTAATATTACCTTGCGCCTGAAGGATGTT
CCATGGGATCAGGCGCTTGATATCATTATGAAAACCAAGAACTTGGATAAACGACGTAATGGTAATGTAATTTGGATTGC
TCCTGTAGCTGAACTGATCAAATCTGAGGATGATGAAGCTAAAGCCATTGCACAAAGTATTAAACTTGCACCGATTCAAA
CCGATTATATTCAGTTGAGCTATGCGAAAGCTGCTGATGTTTTAAAATTGCTAGAAGATTCTCGAAATAGCAAAGGGGCG
GCATCCAACGGTACGGCTGGCACAGATTCACTAGCTTTAGAAAGCTTATTGAGTTCACGCGGTAGTGTGGTTGCCGATTT
ACGAACCAATACTTTAATCGTAAACGACACATCGCAGAACATTGATAAGATCCGCCGGATGATTGACTTACTTGATGTTG
CAGTGAAACAGGTGATGGTTGAAGCACGCATTGTAACTGCACAAACAGATTTCTCTCGTGAACTAGGCATCCGTTGGAGC
GCGCAAAAACTCAATAATAATCCTGTGTGGGGTGGGGATTTCCAACCGAGTTTTGATTTAGGAGTAGATTTGGCAACAGG
TACAGCGGGAACGTTTAACTTTGGTTTGTTAAAAATCTCAGACTATATGTTGAACCTTGAGTTAACAGCGCTACAAGCAG
ATGGTCATGGTGAAGTTTTGTCTGCCCCGAAAGTACTTACGGGCGATAAGCAGAAAGCCTATATTCTACGTGGAGATCAA
ATTCCTTATCAAACGTGGAGTGCCGATACAGGAACAACAACTAGTTTTGTTGATGCTAATTTAAAGTTAGAAGTCACGCC
AAGTATTACACCTGATGGTCGCGTACAAATGTCGTTGAAAATTGAAAAAGATACTGTTGGTACACTAACATCAGCAGGGT
ATTTGATTAATACCAATGAACTTGAAACCAATGTTTTGGTGGATGATGGCGAGACGGTTGTATTGGGTGGTATTTTTGAT
GACATTAAGCAAAATCAATATGAGAAAGTTCCATTTTTTGGGGATTTGCCTGTAGTGGGTGCTTTATTTAAAAATAACAC
CAGATCTAGTGCGCAAACTGAGTTATTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(530-684)

AMIN domain (AMIN)

(55-134)

Secretin and TonB N terminus short domain (STN)

(305-348)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

65.789

100

0.686
  pilQ Acinetobacter baumannii strain A118

65.651

100

0.685
  comQ Acinetobacter baylyi ADP1

62.729

100

0.645
  pilQ Pseudomonas aeruginosa PAK

39.478

99.566

0.393
  pilQ Legionella pneumophila strain Lp02

37.446

99.566

0.373
  pilQ Legionella pneumophila strain ERS1305867

37.722

97.688

0.368