Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   TQH59_RS15200 Genome accession   NZ_CP140708
Coordinates   3044703..3045359 (-) Length   218 a.a.
NCBI ID   WP_168158668.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3039703..3050359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS15180 (TQH59_15180) - 3040788..3041270 (-) 483 WP_333642434.1 shikimate kinase -
  TQH59_RS15185 (TQH59_15185) pilQ 3041359..3043437 (-) 2079 WP_333640605.1 type IV pilus secretin PilQ Machinery gene
  TQH59_RS15190 (TQH59_15190) pilP 3043457..3043984 (-) 528 WP_333640607.1 pilus assembly protein PilP Machinery gene
  TQH59_RS15195 (TQH59_15195) pilO 3043984..3044706 (-) 723 WP_279731419.1 type 4a pilus biogenesis protein PilO Machinery gene
  TQH59_RS15200 (TQH59_15200) pilN 3044703..3045359 (-) 657 WP_168158668.1 PilN domain-containing protein Machinery gene
  TQH59_RS15205 (TQH59_15205) pilM 3045359..3046417 (-) 1059 WP_201701769.1 pilus assembly protein PilM Machinery gene
  TQH59_RS15210 (TQH59_15210) ponA 3046583..3049111 (+) 2529 WP_201701771.1 penicillin-binding protein PBP1a -
  TQH59_RS15215 (TQH59_15215) - 3049143..3049949 (-) 807 WP_201701773.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24240.68 Da        Isoelectric Point: 5.1439

>NTDB_id=915095 TQH59_RS15200 WP_168158668.1 3044703..3045359(-) (pilN) [Acinetobacter johnsonii strain FAHZZU3567hy]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRIEETYGTFVVTADLDEIAQPVAPDATTPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=915095 TQH59_RS15200 WP_168158668.1 3044703..3045359(-) (pilN) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTGGCTTGGTTCTTTTACAGTCAAAAACTGGAAGATCAGGAACAGGCCA
ATCAGTTGGTGGTGAGTACAAATCAAAACTTAGATGTCCAATTAAAGTCATTGGAAGGGCTGCAAGAGCAGCGCAATGCG
ATTGTTGAACGGATGAAGTTGATCCAAGGCTTGCAAGGTCAACGCCCTGTGGCTGTACGTTTGGTCGATGAAATGGTACG
TGTTACACCGAGTAATATGTACATTACTAAGTTTGTGCGTACAGGTGATAAATTTACCATTGAAGGTAAAGCGGAAAGCC
CGAATACAGTTGCGGAATTCTTACGTAATCTCGAAGCATCGGCGTGGTATCGCAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCCATCGTGCCACGTATTGAAGAAACCTATGGCACCTTTGTGGTCACGGC
AGATTTAGATGAGATTGCACAGCCAGTAGCGCCTGATGCGACGACACCTGAAGCCGCAAGTACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.378

95.872

0.665
  comN Acinetobacter baylyi ADP1

73.096

90.367

0.661