Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   TQH59_RS15190 Genome accession   NZ_CP140708
Coordinates   3043457..3043984 (-) Length   175 a.a.
NCBI ID   WP_333640607.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3038457..3048984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS15170 (TQH59_15170) - 3038825..3039664 (-) 840 WP_333640602.1 hypothetical protein -
  TQH59_RS15175 (TQH59_15175) aroB 3039672..3040757 (-) 1086 WP_333640603.1 3-dehydroquinate synthase -
  TQH59_RS15180 (TQH59_15180) - 3040788..3041270 (-) 483 WP_333642434.1 shikimate kinase -
  TQH59_RS15185 (TQH59_15185) pilQ 3041359..3043437 (-) 2079 WP_333640605.1 type IV pilus secretin PilQ Machinery gene
  TQH59_RS15190 (TQH59_15190) pilP 3043457..3043984 (-) 528 WP_333640607.1 pilus assembly protein PilP Machinery gene
  TQH59_RS15195 (TQH59_15195) pilO 3043984..3044706 (-) 723 WP_279731419.1 type 4a pilus biogenesis protein PilO Machinery gene
  TQH59_RS15200 (TQH59_15200) pilN 3044703..3045359 (-) 657 WP_168158668.1 PilN domain-containing protein Machinery gene
  TQH59_RS15205 (TQH59_15205) pilM 3045359..3046417 (-) 1059 WP_201701769.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19359.51 Da        Isoelectric Point: 7.1331

>NTDB_id=915093 TQH59_RS15190 WP_333640607.1 3043457..3043984(-) (pilP) [Acinetobacter johnsonii strain FAHZZU3567hy]
MKYQNLMLSLCVGLFLVGCDSRIDAVNMQMAEIRNQPPLPIEPAPDFPPVPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLSRQLQPLESYAIESLNMKGSMRGQNGQILALIQTPDGEIERVQRGSYLGMNHGRVTNITATQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=915093 TQH59_RS15190 WP_333640607.1 3043457..3043984(-) (pilP) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGAAATATCAAAATCTCATGCTTAGTCTCTGCGTAGGACTATTCCTTGTCGGTTGTGATTCACGTATTGATGCGGTCAA
TATGCAAATGGCTGAAATTCGTAATCAGCCACCATTGCCGATTGAGCCTGCGCCAGATTTTCCACCTGTCCCGACTTTTA
ATTATGCTGCACATCAATTAAAGAGCCCGTTTATGCCAAGCTCATTAGCGGCTGAACTGAAGATTATGGCTGGAAAGCGT
GTTTATCCAAACCTATCTCGTCAATTACAACCTTTGGAAAGTTATGCGATTGAATCGCTTAATATGAAAGGCAGCATGCG
CGGGCAAAATGGGCAAATTTTGGCGTTGATTCAAACACCCGATGGTGAAATTGAACGCGTGCAGCGTGGTAGTTATTTGG
GGATGAATCATGGTCGTGTGACTAATATCACCGCCACACAAATTGATTTGATTGAAATTATTCCGGATGGGCGTGAGGGC
TATGTCGAGCGCCCGAGAAGCCTAGTATTAATTGGGCCGGCGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(29-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.714

100

0.777
  comL Acinetobacter baylyi ADP1

70.857

100

0.709