Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RI032_RS13255 Genome accession   NZ_CP140571
Coordinates   2879927..2881186 (-) Length   419 a.a.
NCBI ID   WP_322547120.1    Uniprot ID   -
Organism   Stenotrophomonas geniculata strain FLMAT1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2874927..2886186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI032_RS13225 - 2875001..2875474 (+) 474 WP_019336437.1 hypothetical protein -
  RI032_RS13230 - 2875483..2876160 (+) 678 WP_005410804.1 response regulator transcription factor -
  RI032_RS13235 - 2876123..2877490 (+) 1368 WP_322547118.1 HAMP domain-containing sensor histidine kinase -
  RI032_RS13240 - 2877987..2878373 (+) 387 WP_049481722.1 hypothetical protein -
  RI032_RS13245 coaE 2878432..2879043 (-) 612 WP_322547119.1 dephospho-CoA kinase -
  RI032_RS13250 - 2879055..2879918 (-) 864 WP_032128827.1 A24 family peptidase -
  RI032_RS13255 pilC 2879927..2881186 (-) 1260 WP_322547120.1 type II secretion system F family protein Machinery gene
  RI032_RS13260 - 2881548..2881991 (+) 444 WP_322547121.1 pilin -
  RI032_RS13265 pilB 2882283..2884010 (+) 1728 WP_322547122.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RI032_RS13270 pilR 2884141..2885514 (-) 1374 WP_322547123.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45799.19 Da        Isoelectric Point: 10.1703

>NTDB_id=914745 RI032_RS13255 WP_322547120.1 2879927..2881186(-) (pilC) [Stenotrophomonas geniculata strain FLMAT1]
MSVSRSAIKKEPVARSTMELQPFVWEGTDKRGIKMKGEQLAKNANLLRAELRKQGINPGQVKPKPKPLFGAAGKPVGAKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDGIRADIEGGSSLNEAISRYPVQFDELYRNLVRAGESAGVLE
TVLDTIASYKENIEALKGKIKKALFYPAMVLVVAFLVSTVLLVWVVPQFEEVFKSFGADLPAFTQMVVNLSRFMVSWWWL
IAIVVIGSVVAIAMTYRRSEKMQHTVDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYGE
AVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGLVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=914745 RI032_RS13255 WP_322547120.1 2879927..2881186(-) (pilC) [Stenotrophomonas geniculata strain FLMAT1]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCCGTGGCGCGTAGCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGTATCAAGATGAAGGGTGAGCAGTTGGCGAAGAACGCCAATCTGCTGCGCGCCGAACTACGCAAGC
AGGGGATCAATCCCGGCCAGGTCAAGCCGAAGCCGAAGCCACTGTTCGGCGCGGCCGGTAAGCCCGTGGGCGCTAAGGAC
ATTGCGTTCTTCAGCCGACAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGAAATCATCGGCAG
CGGGCACAAGAATCCGCGCATGAAGAAGATGGTGGACGGGATCCGCGCCGACATCGAGGGCGGCTCTTCGCTGAACGAGG
CGATCAGCCGCTACCCTGTCCAGTTCGACGAGCTTTACCGCAACCTGGTGCGCGCCGGTGAAAGCGCCGGTGTGCTGGAA
ACGGTGCTGGACACGATCGCTTCCTACAAGGAGAACATCGAAGCACTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GGCCATGGTATTGGTGGTGGCTTTCCTGGTCAGCACTGTCCTGCTGGTCTGGGTGGTGCCGCAGTTCGAGGAGGTCTTCA
AGAGCTTCGGTGCCGACCTTCCGGCCTTCACCCAGATGGTGGTCAACCTATCCCGGTTCATGGTGTCGTGGTGGTGGCTG
ATAGCCATCGTCGTGATCGGATCGGTGGTGGCCATCGCCATGACCTACCGGCGCTCGGAGAAAATGCAGCATACGGTCGA
TCGGCTGGTGCTGAAGGTGCCGGTGATCGGCCAGATCATGCATAACAGCTCGATCGCCCGATTTGCCCGGACCACGGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGTTGGGTATCGTGGCTGGCGCCACCGGCAACAAGGTCTATGGCGAG
GCGGTACTGCGGATGCGCGACGACGTCTCGGTGGGCTACCCGGTCAACATGGCCATGAAGCAGCTGAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCGGGCGCCCTGGACGCCATGCTGTTCAAGGTGGCTGAATACTACG
AGCAGGAAGTGAACAATGCCGTGGATGCCTTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTC
GGTGGCTTGGTCATCGCGATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.03

94.511

0.501
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baylyi ADP1

50.739

96.897

0.492
  pilC Acinetobacter baumannii D1279779

51.134

94.749

0.484
  pilG Neisseria gonorrhoeae MS11

43.073

94.749

0.408
  pilG Neisseria meningitidis 44/76-A

42.821

94.749

0.406
  pilC Vibrio cholerae strain A1552

40.887

96.897

0.396
  pilC Vibrio campbellii strain DS40M4

40.648

95.704

0.389