Detailed information NTG0914747

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RI032_RS13270
• Genome accession: NZ_CP140571
• Coordinates: 2884141..2885514 (-)
• Length: 457 a.a.
• NCBI ID: WP_322547123.1
• Uniprot ID: -
• Organism: Stenotrophomonas geniculata strain FLMAT1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2879141..2890514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI032_RS13255	pilC	2879927..2881186 (-)	1260	WP_322547120.1	type II secretion system F family protein	Machinery gene
RI032_RS13260	-	2881548..2881991 (+)	444	WP_322547121.1	pilin	-
RI032_RS13265	pilB	2882283..2884010 (+)	1728	WP_322547122.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RI032_RS13270	pilR	2884141..2885514 (-)	1374	WP_322547123.1	sigma-54 dependent transcriptional regulator	Regulator
RI032_RS13275	-	2885575..2887188 (-)	1614	WP_019336430.1	ATP-binding protein	-
RI032_RS13280	sucC	2887594..2888763 (+)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
RI032_RS13285	sucD	2888784..2889659 (+)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49539.81 Da
• Isoelectric Point: 6.4424

>NTDB_id=914747 RI032_RS13270 WP_322547123.1 2884141..2885514(-) (pilR) [Stenotrophomonas geniculata strain FLMAT1]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERPAPGPATEQAARLLGASPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALDHYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRAPGGAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=914747 RI032_RS13270 WP_322547123.1 2884141..2885514(-) (pilR) [Stenotrophomonas geniculata strain FLMAT1]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTACTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAAGCACGCGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGATGGCAACGGCATCGAGCTGGTCAGCGAAATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGTGGCCTGGTCAAGCACGCGCTGGAACTCAACAACACCGAACGCCCTGCGCCCGGCCCCGCCA
CCGAACAGGCTGCACGCCTGCTGGGCGCTTCGCCGGCCATGGACGTGTTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGTGAATCCGGGGTTGGCAAGGAACTGGTCGCTCGCACCATCCACGCCCAGGGCGCGCG
TGCGGCCGGCCCGTTCGTACCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AAGGCAGCTTCAGCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCGCGGTCGGTGCGGC
CAACGAAGAGCCGGTGGACGTACGCATCCTCTCTGCCACCCACAAGGACCTGGCCGAGCTGGTCGAAGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGAG
CTGGCGGCCGCCGTGCTGGCGCGGCTGGCCCGCAGCCACGGCCGTGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGAGGC
GCTGGACCACTATGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATTCTGGAACGCGCGCTGGCACTGGCCGAAGAAG
ACCGCATCGGTGCCGACGACCTGCGCCTGCCGCAGCACGCCCCACGTGCGCCCGGCGGCGCAGCTCCGGCCGAAGCCGTG
GCCGACCTGCAGCCCGGCAGCGCCGCCCTGCCCTCGTACATCGAGCAGCTGGAACGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGGACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.5	99.781	0.624
pilR	Acinetobacter baumannii strain A118	47.732	100	0.484