Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   RI032_RS12930 Genome accession   NZ_CP140571
Coordinates   2808477..2809535 (+) Length   352 a.a.
NCBI ID   WP_010484061.1    Uniprot ID   A0A0L8AA94
Organism   Stenotrophomonas geniculata strain FLMAT1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2803477..2814535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI032_RS12915 - 2803995..2804738 (+) 744 WP_049453335.1 hypothetical protein -
  RI032_RS12920 - 2804915..2805559 (-) 645 WP_279939327.1 hypothetical protein -
  RI032_RS12925 - 2805834..2808257 (-) 2424 WP_322547103.1 penicillin-binding protein 1A -
  RI032_RS12930 pilM 2808477..2809535 (+) 1059 WP_010484061.1 pilus assembly protein PilM Machinery gene
  RI032_RS12935 - 2809535..2810425 (+) 891 WP_322547104.1 PilN domain-containing protein -
  RI032_RS12940 pilO 2810422..2811078 (+) 657 WP_049410131.1 type 4a pilus biogenesis protein PilO -
  RI032_RS12945 - 2811105..2811611 (+) 507 WP_010484064.1 pilus assembly protein PilP -
  RI032_RS12950 - 2811633..2813606 (+) 1974 WP_049437119.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37753.41 Da        Isoelectric Point: 4.4089

>NTDB_id=914744 RI032_RS12930 WP_010484061.1 2808477..2809535(+) (pilM) [Stenotrophomonas geniculata strain FLMAT1]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIEGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=914744 RI032_RS12930 WP_010484061.1 2808477..2809535(+) (pilM) [Stenotrophomonas geniculata strain FLMAT1]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGTGGCAACCGTTTTCGTGTGGAACATTACGCCGTGGAACCTCTTCCGCCGAACGCGGTGGTGGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGTGCGATGAACCGCTCGGGGAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAAAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCCCTGGAACTGGGG
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTACGCCCTGGTGGCCAGTGAGCTGCCGGT
GTCCATCGAGGGCGTGGTCGCGCTGGTCGATATCGGCGCCACCATGACCACCCTCAACGTCCTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGTTACGGCCTGAGCTACGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGTGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCAGGCAGCGAGTTCAACCGCGTTGACCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTCGGCGGCCTGCCGGAAATGGTCGAGGAACAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGGCCGAAGGTGAACGCACATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L8AA94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474