Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SR908_RS01690 Genome accession   NZ_CP140151
Coordinates   339170..339442 (+) Length   90 a.a.
NCBI ID   WP_097022943.1    Uniprot ID   A0A285VRU5
Organism   Chromohalobacter canadensis strain ATCC 43984     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334170..344442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR908_RS01655 (SR908_01655) - 334335..335507 (+) 1173 WP_245846392.1 FUSC family protein -
  SR908_RS01660 (SR908_01660) - 335543..335854 (-) 312 WP_246922862.1 hypothetical protein -
  SR908_RS01665 (SR908_01665) - 335910..336188 (-) 279 WP_097022940.1 succinate dehydrogenase assembly factor 2 -
  SR908_RS01670 (SR908_01670) - 336414..336710 (+) 297 WP_040241697.1 integration host factor subunit beta -
  SR908_RS01675 (SR908_01675) - 336752..337057 (+) 306 WP_040241700.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  SR908_RS01680 (SR908_01680) lapB 337058..338242 (+) 1185 WP_097022941.1 lipopolysaccharide assembly protein LapB -
  SR908_RS01685 (SR908_01685) pyrF 338246..338947 (-) 702 WP_097022942.1 orotidine-5'-phosphate decarboxylase -
  SR908_RS01690 (SR908_01690) comEA 339170..339442 (+) 273 WP_097022943.1 ComEA family DNA-binding protein Machinery gene
  SR908_RS01695 (SR908_01695) - 339529..340290 (-) 762 WP_097022944.1 SDR family oxidoreductase -
  SR908_RS01700 (SR908_01700) - 340486..341001 (+) 516 WP_097022945.1 FxsA family protein -
  SR908_RS01705 (SR908_01705) - 341181..341471 (+) 291 WP_040241717.1 co-chaperone GroES -
  SR908_RS01710 (SR908_01710) groL 341548..343191 (+) 1644 WP_097022946.1 chaperonin GroEL -
  SR908_RS01715 (SR908_01715) - 343348..344085 (+) 738 WP_246922865.1 RNA methyltransferase -

Sequence

Protein


Download         Length: 90 a.a.        Molecular weight: 9293.61 Da        Isoelectric Point: 4.0785

>NTDB_id=913053 SR908_RS01690 WP_097022943.1 339170..339442(+) (comEA) [Chromohalobacter canadensis strain ATCC 43984]
MKKLLSCALLTLALSVTTLAVAQEDAAAPIDINQASAETLAELPGIGDVKAQAIIEDRDANGPFASLDALTRVKGIGEAT
VQGLDDRVTF

Nucleotide


Download         Length: 273 bp        

>NTDB_id=913053 SR908_RS01690 WP_097022943.1 339170..339442(+) (comEA) [Chromohalobacter canadensis strain ATCC 43984]
ATGAAGAAGCTACTGAGCTGTGCTCTACTGACACTGGCACTGAGCGTCACTACCCTCGCGGTCGCCCAGGAAGACGCTGC
GGCGCCTATCGACATCAATCAAGCCTCTGCTGAAACGCTGGCCGAGCTGCCGGGCATTGGCGACGTCAAAGCACAGGCGA
TCATTGAGGACCGCGATGCGAATGGCCCCTTCGCCTCACTCGACGCCCTGACCCGCGTCAAGGGCATCGGCGAAGCAACG
GTGCAGGGCCTGGATGATCGTGTCACGTTCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(27-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A285VRU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

50.526

100

0.533
  comEA Vibrio cholerae C6706

50.526

100

0.533
  comEA Vibrio campbellii strain DS40M4

43.011

100

0.444
  comEA Vibrio parahaemolyticus RIMD 2210633

43.478

100

0.444
  comE Neisseria gonorrhoeae MS11

42.857

100

0.433
  comE Neisseria gonorrhoeae MS11

42.857

100

0.433
  comE Neisseria gonorrhoeae MS11

42.857

100

0.433
  comE Neisseria gonorrhoeae MS11

42.857

100

0.433
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.778

100

0.378
  comE1/comEA Haemophilus influenzae Rd KW20

41.772

87.778

0.367