Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ABII15_RS13490 Genome accession   NZ_CP159534
Coordinates   2925721..2926326 (-) Length   201 a.a.
NCBI ID   WP_353947049.1    Uniprot ID   A0AAU8J574
Organism   Streptomyces sp. HUAS MG91     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2920721..2931326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABII15_RS13475 (ABII15_13475) - 2922508..2923485 (+) 978 WP_353942551.1 hypothetical protein -
  ABII15_RS13480 (ABII15_13480) clpX 2923561..2924847 (-) 1287 WP_353942552.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ABII15_RS13485 (ABII15_13485) clpP 2925003..2925662 (-) 660 WP_018531452.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ABII15_RS13490 (ABII15_13490) clpP 2925721..2926326 (-) 606 WP_353947049.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ABII15_RS13495 (ABII15_13495) tig 2926639..2927997 (-) 1359 WP_353942553.1 trigger factor -
  ABII15_RS13510 (ABII15_13510) - 2928665..2928859 (-) 195 WP_353942554.1 hypothetical protein -
  ABII15_RS13515 (ABII15_13515) - 2929530..2930702 (+) 1173 WP_353942555.1 acyltransferase family protein -
  ABII15_RS13520 (ABII15_13520) - 2930726..2931163 (-) 438 WP_353942556.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21182.96 Da        Isoelectric Point: 4.4663

>NTDB_id=912702 ABII15_RS13490 WP_353947049.1 2925721..2926326(-) (clpP) [Streptomyces sp. HUAS MG91]
MPSAAGEPSIGGGLGDHVYNRLLGERIVFLGQQVDDDIANKITAQMLLLAADPDKDIYLYINSPGGSVTAGMAIYDTMQY
IPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGIGGTASDVKIQAEYLLRTKQRMARITAEHSGQTIE
TIIRDGDRDRWYTAEEAKEYGLIDEIITAATGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=912702 ABII15_RS13490 WP_353947049.1 2925721..2926326(-) (clpP) [Streptomyces sp. HUAS MG91]
ATGCCTTCCGCCGCCGGCGAGCCGTCCATCGGTGGTGGCCTCGGCGACCATGTCTACAACCGACTGCTCGGCGAGCGGAT
CGTCTTCCTCGGCCAGCAGGTCGACGACGACATCGCGAACAAGATCACTGCGCAGATGCTCCTTCTGGCCGCCGACCCGG
ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGGTGACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCCCGAACGACGTGGTGACGATCGGTATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCACGGGCGGCACGGCGGG
CAAGCGCTTCGCCCTGCCGAACACCGACATCCTGATGCACCAGGGCTCCGCGGGCATCGGCGGTACCGCCTCCGACGTCA
AGATCCAGGCCGAGTACCTGCTGCGTACGAAGCAGCGCATGGCCAGGATCACGGCCGAGCACTCCGGCCAGACCATCGAG
ACGATCATCCGTGACGGTGACCGCGACCGCTGGTACACCGCGGAGGAGGCCAAGGAGTACGGCCTCATCGACGAGATCAT
CACTGCCGCTACGGGTGTTCCGGGCGGCGGCGGCACGGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(17-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAU8J574

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.233

85.572

0.473
  clpP Lactococcus lactis subsp. cremoris KW2

51.63

91.542

0.473
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.087

91.542

0.468
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.099

90.547

0.463
  clpP Streptococcus thermophilus LMD-9

52.299

86.567

0.453
  clpP Streptococcus thermophilus LMG 18311

52.299

86.567

0.453
  clpP Streptococcus mutans UA159

52.601

86.07

0.453
  clpP Streptococcus pyogenes MGAS315

52.023

86.07

0.448
  clpP Streptococcus pyogenes JRS4

52.023

86.07

0.448
  clpP Streptococcus pneumoniae TIGR4

51.445

86.07

0.443
  clpP Streptococcus pneumoniae R6

51.445

86.07

0.443
  clpP Streptococcus pneumoniae Rx1

51.445

86.07

0.443
  clpP Streptococcus pneumoniae D39

51.445

86.07

0.443