Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SO574_RS13775 Genome accession   NZ_CP140102
Coordinates   3010050..3011159 (-) Length   369 a.a.
NCBI ID   WP_322803347.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain VA-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3005050..3016159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO574_RS13745 (SO574_13745) hemF 3005577..3006494 (-) 918 WP_322803342.1 oxygen-dependent coproporphyrinogen oxidase -
  SO574_RS13750 (SO574_13750) - 3006529..3007086 (-) 558 WP_322803343.1 L-threonylcarbamoyladenylate synthase -
  SO574_RS13755 (SO574_13755) purE 3007287..3007772 (+) 486 WP_322803344.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  SO574_RS13760 (SO574_13760) - 3007777..3008910 (+) 1134 WP_322803345.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  SO574_RS13765 (SO574_13765) - 3008975..3009544 (-) 570 WP_322803346.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  SO574_RS13770 (SO574_13770) - 3009568..3010047 (-) 480 WP_211915702.1 DUF494 family protein -
  SO574_RS13775 (SO574_13775) dprA 3010050..3011159 (-) 1110 WP_322803347.1 DNA-processing protein DprA Machinery gene
  SO574_RS13780 (SO574_13780) - 3011143..3012231 (-) 1089 WP_322803348.1 LysM domain-containing protein -
  SO574_RS13785 (SO574_13785) def 3012370..3012888 (+) 519 WP_221068377.1 peptide deformylase -
  SO574_RS13790 (SO574_13790) fmt 3012920..3013867 (+) 948 WP_322803349.1 methionyl-tRNA formyltransferase -
  SO574_RS13795 (SO574_13795) rsmB 3013950..3015233 (+) 1284 WP_322803350.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39633.35 Da        Isoelectric Point: 6.6060

>NTDB_id=912539 SO574_RS13775 WP_322803347.1 3010050..3011159(-) (dprA) [Vibrio alfacsensis strain VA-1]
MKIQNESDLAAWLKLTCLPGIGAVKLNKLLSKDSPSNIVQYSTSELQFLGFTDKQLQAWSMVDKEVDACLAWLASSSQHS
ILTLANSRYPPLLKQTVAPPPLLFVKGDASCLSLPQIAMVGSRNASVNGLQHARSFASELVQHDLIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLEQVYPTRHRSLAQRVIESGALVSEFRPEAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPTSINAPNATGGNQLIRSGACLVQNTQEVLNEIQSLLNWSVSQSVDLFSAPMNEEELPFPQLFA
NVGNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=912539 SO574_RS13775 WP_322803347.1 3010050..3011159(-) (dprA) [Vibrio alfacsensis strain VA-1]
ATGAAAATACAAAATGAGAGTGACCTTGCTGCTTGGTTAAAACTAACGTGTTTACCGGGGATCGGCGCGGTAAAGCTGAA
TAAGTTGTTGAGTAAAGATTCGCCAAGCAATATCGTCCAGTATTCAACCTCTGAGCTGCAATTTTTAGGGTTTACCGACA
AGCAACTACAAGCGTGGTCTATGGTTGATAAAGAAGTGGATGCTTGTTTAGCTTGGTTAGCGTCATCTTCCCAGCATTCA
ATTCTTACCTTGGCTAACTCCCGGTATCCACCGCTATTAAAGCAAACGGTCGCTCCACCTCCTTTGTTGTTTGTTAAAGG
TGATGCGAGCTGTTTATCCTTGCCACAAATCGCCATGGTTGGTAGTCGCAATGCCAGTGTGAATGGTTTGCAACATGCAC
GCAGTTTTGCTTCAGAACTCGTTCAGCATGATCTGATCGTGACGAGTGGATTGGCTTTAGGTATTGATGGTCATGCGCAT
GATGGAGCTTTGCAAGCCGGTGGTAAAACGATCGCAGTGCTAGGCTCAGGATTAGAGCAAGTGTATCCAACAAGGCATCG
TAGTCTGGCGCAGCGGGTGATAGAAAGCGGTGCGTTAGTGTCGGAGTTTCGCCCGGAGGCAAAACCGAGAGCAGAAAACT
TTCCGCGTCGAAATCGAATTATAAGTGGCTTATCTTTAGGTGTTTTAGTTGTTGAAGCGGCAGAAAAAAGTGGCTCTTTG
ATAACGGCACGTTATGCCCTAGAACAAGGGCGTGAAGTGTTTGCGTTGCCGACATCGATCAATGCTCCGAATGCGACGGG
GGGTAATCAGTTGATTCGTAGTGGTGCTTGCCTCGTACAAAATACCCAAGAGGTGCTAAATGAAATACAATCTTTACTCA
ATTGGTCTGTTAGTCAGAGTGTAGATTTGTTTTCTGCACCAATGAATGAAGAAGAATTGCCATTTCCTCAGCTGTTCGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(316-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

87.263

100

0.873
  dprA Vibrio cholerae strain A1552

57.297

100

0.575
  dprA Glaesserella parasuis strain SC1401

48.533

100

0.493
  dprA Legionella pneumophila strain ERS1305867

44.044

97.832

0.431
  dprA Haemophilus influenzae Rd KW20

43.235

92.141

0.398
  dprA Neisseria meningitidis strain C311

36.02

100

0.388
  dprA Neisseria meningitidis MC58

36.02

100

0.388
  dprA Neisseria gonorrhoeae MS11

35.115

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

34.86

100

0.371