Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   U0544_RS06420 Genome accession   NZ_CP139944
Coordinates   1193563..1194789 (-) Length   408 a.a.
NCBI ID   WP_002114869.1    Uniprot ID   A0A009NCN6
Organism   Acinetobacter pittii strain CARB128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1188563..1199789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS06390 (U0544_06420) - 1188593..1189903 (+) 1311 WP_002114682.1 tetratricopeptide repeat protein -
  U0544_RS06395 (U0544_06425) - 1189980..1190306 (+) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  U0544_RS06400 (U0544_06430) rlmB 1190409..1191158 (+) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  U0544_RS06405 (U0544_06435) - 1191194..1192108 (+) 915 WP_002115017.1 DMT family transporter -
  U0544_RS06410 (U0544_06440) coaE 1192105..1192701 (-) 597 WP_002115011.1 dephospho-CoA kinase -
  U0544_RS06415 (U0544_06445) pilD 1192703..1193563 (-) 861 WP_002114758.1 prepilin peptidase Machinery gene
  U0544_RS06420 (U0544_06450) pilC 1193563..1194789 (-) 1227 WP_002114869.1 type II secretion system F family protein Machinery gene
  U0544_RS06425 (U0544_06455) pilB 1194816..1196528 (-) 1713 WP_005804145.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U0544_RS06430 (U0544_06460) tpiA 1196820..1197614 (+) 795 WP_002114826.1 triose-phosphate isomerase -
  U0544_RS06435 (U0544_06465) secG 1197627..1197956 (+) 330 WP_326938900.1 preprotein translocase subunit SecG -
  U0544_RS06455 (U0544_06485) rimP 1198593..1199117 (+) 525 WP_002114922.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45041.48 Da        Isoelectric Point: 9.8207

>NTDB_id=911922 U0544_RS06420 WP_002114869.1 1193563..1194789(-) (pilC) [Acinetobacter pittii strain CARB128]
MTVKKAQMMPTFAYEGVDRKGIKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=911922 U0544_RS06420 WP_002114869.1 1193563..1194789(-) (pilC) [Acinetobacter pittii strain CARB128]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCATAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTGTTCAAGAAGAAAGTATCAACGCTCGATATCACGATTTTCACGCGACAACTTGCAACC
ATGATGAAAGCTGGTGTCCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGGAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATCAAAAAAGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACTATTATTTTGATGGTTAAAGTAGTGCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCCTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATGGATTAGATAAACTTACACTGAAACTACCTATCTTTGG
CGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCAGTCATGAAAATTCGTGAAGATGTAGCT
ACAGGCCAACAACTTCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCTACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGTGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NCN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365