Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   U0449_RS02595 Genome accession   NZ_CP139862
Coordinates   517844..518110 (-) Length   88 a.a.
NCBI ID   WP_050218839.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 05H0020-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 518415..518639 517844..518110 flank 305


Gene organization within MGE regions


Location: 517844..518639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0449_RS02595 HI0659 517844..518110 (-) 267 WP_050218839.1 helix-turn-helix domain-containing protein Machinery gene
  U0449_RS02600 - 518236..518639 (-) 404 Protein_517 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9571.20 Da        Isoelectric Point: 6.3217

>NTDB_id=911463 U0449_RS02595 WP_050218839.1 517844..518110(-) (HI0659) [Streptococcus pneumoniae strain 05H0020-2]
MEGCPSELFSKKEILESDMRVAIMSELIEARNKQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=911463 U0449_RS02595 WP_050218839.1 517844..518110(-) (HI0659) [Streptococcus pneumoniae strain 05H0020-2]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGAAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAACTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

62.338

87.5

0.545