Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   U0542_RS08650 Genome accession   NZ_CP139831
Coordinates   1630728..1631201 (-) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii strain Nord12-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1625728..1636201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0542_RS08635 (U0542_08635) pilX 1628357..1629175 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  U0542_RS08640 (U0542_08640) pilW 1629172..1630173 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  U0542_RS08645 (U0542_08645) pilV 1630174..1630734 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  U0542_RS08650 (U0542_08650) fimU 1630728..1631201 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  U0542_RS08655 (U0542_08655) ispH 1631371..1632321 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U0542_RS08660 (U0542_08660) gmk 1632444..1633073 (+) 630 WP_000015937.1 guanylate kinase -
  U0542_RS08665 (U0542_08665) rpoZ 1633146..1633424 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  U0542_RS08670 (U0542_08670) - 1633463..1633593 (+) 131 Protein_1542 hypothetical protein -
  U0542_RS08675 (U0542_08675) - 1633633..1635738 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=911147 U0542_RS08650 WP_001214060.1 1630728..1631201(-) (fimU) [Acinetobacter baumannii strain Nord12-3]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=911147 U0542_RS08650 WP_001214060.1 1630728..1631201(-) (fimU) [Acinetobacter baumannii strain Nord12-3]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987