Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   SD440_RS17695 Genome accession   NZ_CP139561
Coordinates   3384914..3385381 (-) Length   155 a.a.
NCBI ID   WP_038475569.1    Uniprot ID   A0A653WTG9
Organism   Bacillus altitudinis strain NCCP     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3379914..3390381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS17660 fliW 3380050..3380484 (-) 435 WP_345911144.1 flagellar assembly protein FliW -
  SD440_RS17665 - 3380513..3381091 (-) 579 WP_008348255.1 DUF6470 family protein -
  SD440_RS17670 flgL 3381138..3382049 (-) 912 WP_171465820.1 flagellar hook-associated protein FlgL -
  SD440_RS17675 flgK 3382058..3383578 (-) 1521 WP_099496871.1 flagellar hook-associated protein FlgK -
  SD440_RS17680 - 3383594..3384076 (-) 483 WP_007499977.1 flagellar protein FlgN -
  SD440_RS17685 flgM 3384095..3384358 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  SD440_RS17690 - 3384438..3384857 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  SD440_RS17695 comFC 3384914..3385381 (-) 468 WP_038475569.1 ComF family protein Machinery gene
  SD440_RS17700 - 3385433..3385636 (-) 204 Protein_3433 hypothetical protein -
  SD440_RS17705 - 3385597..3385890 (-) 294 WP_008348267.1 competence protein ComFB -
  SD440_RS17710 comFA 3385955..3387028 (-) 1074 WP_345911145.1 helicase-related protein Machinery gene
  SD440_RS17715 - 3387454..3388296 (-) 843 WP_007499966.1 DegV family protein -
  SD440_RS17720 degU 3388508..3389197 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17700.76 Da        Isoelectric Point: 10.7974

>NTDB_id=910172 SD440_RS17695 WP_038475569.1 3384914..3385381(-) (comFC) [Bacillus altitudinis strain NCCP]
MNRSVYAYNDFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPIL
EPLIKVHQSKQSKKRKNERLHQQNLFQLRQSNPIVLKDIILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 468 bp        

>NTDB_id=910172 SD440_RS17695 WP_038475569.1 3384914..3385381(-) (comFC) [Bacillus altitudinis strain NCCP]
ATGAATCGGTCTGTTTATGCTTACAACGACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTT
AGCTGATCTATTTAAAAAAGATGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTCCTTGTCCCAATTC
CTTTGAGTAAAGAGAGATTAAAGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTG
GAGCCACTTATAAAAGTACATCAAAGTAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCA
ATTAAGGCAGTCAAACCCGATCGTTCTAAAGGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATC
ATGCAGCAAAAATTTTAAAAGACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(88-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653WTG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

54.839

100

0.548
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

98.71

0.406
  comFC/cflB Streptococcus mitis SK321

41.176

98.71

0.406
  comFC/cflB Streptococcus pneumoniae Rx1

40.523

98.71

0.4
  comFC/cflB Streptococcus pneumoniae D39

40.523

98.71

0.4
  comFC/cflB Streptococcus pneumoniae R6

40.523

98.71

0.4
  comFC/cflB Streptococcus pneumoniae TIGR4

40.523

98.71

0.4
  comFC Lactococcus lactis subsp. cremoris KW2

42.657

92.258

0.394