Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   SD440_RS17720 Genome accession   NZ_CP139561
Coordinates   3388508..3389197 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain NCCP     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3383508..3394197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS17680 - 3383594..3384076 (-) 483 WP_007499977.1 flagellar protein FlgN -
  SD440_RS17685 flgM 3384095..3384358 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  SD440_RS17690 - 3384438..3384857 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  SD440_RS17695 comFC 3384914..3385381 (-) 468 WP_038475569.1 ComF family protein Machinery gene
  SD440_RS17700 - 3385433..3385636 (-) 204 Protein_3433 hypothetical protein -
  SD440_RS17705 - 3385597..3385890 (-) 294 WP_008348267.1 competence protein ComFB -
  SD440_RS17710 comFA 3385955..3387028 (-) 1074 WP_345911145.1 helicase-related protein Machinery gene
  SD440_RS17715 - 3387454..3388296 (-) 843 WP_007499966.1 DegV family protein -
  SD440_RS17720 degU 3388508..3389197 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  SD440_RS17725 degS 3389262..3390437 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  SD440_RS17730 - 3390659..3391327 (+) 669 WP_017357860.1 YigZ family protein -
  SD440_RS17735 - 3391312..3392409 (+) 1098 WP_345911146.1 LCP family protein -
  SD440_RS17740 - 3392448..3393515 (-) 1068 WP_024719245.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=910174 SD440_RS17720 WP_008348273.1 3388508..3389197(-) (degU) [Bacillus altitudinis strain NCCP]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=910174 SD440_RS17720 WP_008348273.1 3388508..3389197(-) (degU) [Bacillus altitudinis strain NCCP]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996