Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SD440_RS17710 Genome accession   NZ_CP139561
Coordinates   3385955..3387028 (-) Length   357 a.a.
NCBI ID   WP_345911145.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NCCP     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3380955..3392028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS17670 flgL 3381138..3382049 (-) 912 WP_171465820.1 flagellar hook-associated protein FlgL -
  SD440_RS17675 flgK 3382058..3383578 (-) 1521 WP_099496871.1 flagellar hook-associated protein FlgK -
  SD440_RS17680 - 3383594..3384076 (-) 483 WP_007499977.1 flagellar protein FlgN -
  SD440_RS17685 flgM 3384095..3384358 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  SD440_RS17690 - 3384438..3384857 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  SD440_RS17695 comFC 3384914..3385381 (-) 468 WP_038475569.1 ComF family protein Machinery gene
  SD440_RS17700 - 3385433..3385636 (-) 204 Protein_3433 hypothetical protein -
  SD440_RS17705 - 3385597..3385890 (-) 294 WP_008348267.1 competence protein ComFB -
  SD440_RS17710 comFA 3385955..3387028 (-) 1074 WP_345911145.1 helicase-related protein Machinery gene
  SD440_RS17715 - 3387454..3388296 (-) 843 WP_007499966.1 DegV family protein -
  SD440_RS17720 degU 3388508..3389197 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  SD440_RS17725 degS 3389262..3390437 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  SD440_RS17730 - 3390659..3391327 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 40890.59 Da        Isoelectric Point: 10.5491

>NTDB_id=910173 SD440_RS17710 WP_345911145.1 3385955..3387028(-) (comFA) [Bacillus altitudinis strain NCCP]
MKETRRVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYALNNGMSVCIATPRTDVVLELEPR
MRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDERLQFAVLKSMKKTGVRIYLSAT
PSKKMQKDVAHRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLYEHITKKKRVLLFVPSISTMKKVT
HILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAESPIFSESALVQISGRAGRHPDF
FNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=910173 SD440_RS17710 WP_345911145.1 3385955..3387028(-) (comFA) [Bacillus altitudinis strain NCCP]
ATGAAAGAAACAAGACGAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGT
AGAAGCAATCCAAAACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAA
TAAAATATGCGCTAAATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGA
ATGAGAAAGGCATTTCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTAT
GATCGCTACAACCCATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTT
ATTCAATGGATGAACGGCTTCAGTTTGCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACA
CCATCTAAAAAAATGCAAAAGGATGTTGCTCATAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACC
GTTGCCTGTCCCAACATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGA
ACTGGCTGTATGAACATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACT
CATATTCTTCAAGGTCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTT
CAGAGATCATAGATACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAGGTGGGCG
TATTAGGTGCGGAATCTCCTATTTTTTCAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTT
TTTAACGGAGACGTATACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAA
TAATACAGCTGAAAAAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(14-162)

Helicase conserved C-terminal domain (Helicase_C)

(214-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

57.184

97.479

0.557
  comFA/cflA Streptococcus pneumoniae Rx1

41.279

96.359

0.398
  comFA/cflA Streptococcus pneumoniae D39

41.279

96.359

0.398
  comFA/cflA Streptococcus pneumoniae R6

41.279

96.359

0.398
  comFA/cflA Streptococcus pneumoniae TIGR4

40.988

96.359

0.395
  comFA/cflA Streptococcus mitis NCTC 12261

40.698

96.359

0.392
  comFA Latilactobacillus sakei subsp. sakei 23K

39.942

96.078

0.384
  comFA/cflA Streptococcus mitis SK321

39.535

96.359

0.381
  comFA Lactococcus lactis subsp. cremoris KW2

38.416

95.518

0.367