Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SD440_RS09050 Genome accession   NZ_CP139561
Coordinates   1756982..1758232 (+) Length   416 a.a.
NCBI ID   WP_007499480.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NCCP     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1751982..1763232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS09025 - 1753393..1754121 (+) 729 WP_046526665.1 SDR family oxidoreductase -
  SD440_RS09030 - 1754195..1754452 (+) 258 WP_008344693.1 DUF3243 domain-containing protein -
  SD440_RS09035 - 1754584..1755375 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  SD440_RS09040 - 1755399..1756310 (+) 912 WP_008344690.1 helix-turn-helix domain-containing protein -
  SD440_RS09045 pgsA 1756384..1756965 (+) 582 WP_008344688.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SD440_RS09050 cinA 1756982..1758232 (+) 1251 WP_007499480.1 competence/damage-inducible protein A Machinery gene
  SD440_RS09055 recA 1758410..1759453 (+) 1044 WP_007499478.1 recombinase RecA Machinery gene
  SD440_RS09060 rny 1759754..1761316 (+) 1563 WP_007499477.1 ribonuclease Y -
  SD440_RS09065 - 1761406..1762200 (+) 795 WP_019744184.1 TIGR00282 family metallophosphoesterase -
  SD440_RS09070 spoVS 1762403..1762663 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45628.76 Da        Isoelectric Point: 4.8653

>NTDB_id=910148 SD440_RS09050 WP_007499480.1 1756982..1758232(+) (cinA) [Bacillus altitudinis strain NCCP]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILERVGEYFYGYGDTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=910148 SD440_RS09050 WP_007499480.1 1756982..1758232(+) (cinA) [Bacillus altitudinis strain NCCP]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCGAATTTTATTATCTTCTCAGGGGGTCTTGGACCAACGAAAGATGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGTAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAATACTT
CCGTAAAACCGGACGTGATATGTCACCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGATCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CATCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTCGGCCTAAAGGAAAAAATCGTGTCTGTTGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAGCTGGAAACAGATCTTGAAGATTTAATTGATGCACAGACCAATCCGACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAACGGGTCGGCGAGTACTTCTACGGATATGGTGATACATCTCTTGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGCAGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTAAACGGTAGTGTGGTTTGTTACACAAATCAAGTCAAGCAGCAAGTGCTGGGC
TGCCGTGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCGTTAGAGCTCGCAGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGACAGCCGGTTGGAAAAGTAT
TTATCGGGCTATCGACAAAAGATCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGCCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.699

99.76

0.745
  cinA Streptococcus mitis SK321

47.847

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.608

100

0.478
  cinA Streptococcus pneumoniae Rx1

47.368

100

0.476
  cinA Streptococcus pneumoniae R6

47.368

100

0.476
  cinA Streptococcus pneumoniae D39

47.129

100

0.474
  cinA Streptococcus mutans UA159

48.157

97.837

0.471
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394