Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SNE23_RS09705 Genome accession   NZ_CP139483
Coordinates   1871672..1871959 (+) Length   95 a.a.
NCBI ID   WP_000648329.1    Uniprot ID   A0A2A7D356
Organism   Bacillus sp. RA(2023)     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1866672..1876959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNE23_RS09685 (SNE23_09685) - 1867905..1868048 (+) 144 WP_350222565.1 DUF4083 family protein -
  SNE23_RS09690 (SNE23_09690) - 1868079..1868540 (+) 462 WP_048527390.1 NUDIX hydrolase -
  SNE23_RS09695 (SNE23_09695) nadE 1868587..1869405 (-) 819 WP_048527391.1 ammonia-dependent NAD(+) synthetase -
  SNE23_RS09700 (SNE23_09700) - 1869676..1871556 (+) 1881 WP_321529494.1 ABC transporter permease -
  SNE23_RS09705 (SNE23_09705) abrB 1871672..1871959 (+) 288 WP_000648329.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  SNE23_RS09710 (SNE23_09710) - 1872214..1873164 (+) 951 WP_128805591.1 serine protease -
  SNE23_RS09715 (SNE23_09715) - 1873205..1873513 (-) 309 WP_048527394.1 ArsR/SmtB family transcription factor -
  SNE23_RS09720 (SNE23_09720) - 1873622..1874557 (+) 936 WP_071757919.1 aldo/keto reductase -
  SNE23_RS09725 (SNE23_09725) - 1874607..1875782 (+) 1176 WP_157409616.1 MFS transporter -
  SNE23_RS09730 (SNE23_09730) - 1875831..1876032 (+) 202 Protein_1829 hypothetical protein -
  SNE23_RS09735 (SNE23_09735) - 1876078..1876302 (-) 225 WP_000162601.1 hypothetical protein -
  SNE23_RS09740 (SNE23_09740) - 1876387..1876734 (-) 348 WP_000426320.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10591.31 Da        Isoelectric Point: 6.9795

>NTDB_id=909993 SNE23_RS09705 WP_000648329.1 1871672..1871959(+) (abrB) [Bacillus sp. RA(2023)]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
HLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=909993 SNE23_RS09705 WP_000648329.1 1871672..1871959(+) (abrB) [Bacillus sp. RA(2023)]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGGGCGAAA
CATTTAATAAAAGAAATAGAGAAGTTTTTAAATAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7D356

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516