Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   SNE23_RS07670 Genome accession   NZ_CP139483
Coordinates   1460924..1461526 (-) Length   200 a.a.
NCBI ID   WP_076867523.1    Uniprot ID   A0AAU0QXI5
Organism   Bacillus sp. RA(2023)     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1455924..1466526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNE23_RS07650 (SNE23_07650) dnaD 1456252..1456959 (+) 708 WP_071757493.1 DNA replication protein DnaD -
  SNE23_RS07655 (SNE23_07655) nth 1456975..1457622 (+) 648 WP_048527079.1 endonuclease III -
  SNE23_RS07660 (SNE23_07660) - 1457626..1458144 (+) 519 WP_048527081.1 YpoC family protein -
  SNE23_RS07665 (SNE23_07665) - 1458168..1460858 (-) 2691 WP_157409508.1 PBP1A family penicillin-binding protein -
  SNE23_RS07670 (SNE23_07670) recU 1460924..1461526 (-) 603 WP_076867523.1 Holliday junction resolvase RecU Machinery gene
  SNE23_RS07675 (SNE23_07675) - 1461629..1462654 (+) 1026 WP_071757543.1 DUF2515 domain-containing protein -
  SNE23_RS07680 (SNE23_07680) - 1462812..1462988 (-) 177 WP_052904093.1 hypothetical protein -
  SNE23_RS07685 (SNE23_07685) - 1463074..1463316 (+) 243 WP_157409509.1 hypothetical protein -
  SNE23_RS07690 (SNE23_07690) - 1463332..1463676 (+) 345 WP_048527087.1 YppE family protein -
  SNE23_RS07695 (SNE23_07695) - 1463701..1463892 (-) 192 WP_048527089.1 YppF family protein -
  SNE23_RS07700 (SNE23_07700) - 1464070..1464540 (+) 471 WP_157409510.1 YppG family protein -
  SNE23_RS07705 (SNE23_07705) - 1464696..1465139 (+) 444 WP_048527092.1 CotD family spore coat protein -
  SNE23_RS07710 (SNE23_07710) - 1465196..1465750 (+) 555 WP_048527093.1 DUF1273 domain-containing protein -
  SNE23_RS07715 (SNE23_07715) gpsB 1465848..1466186 (+) 339 WP_000622433.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23372.64 Da        Isoelectric Point: 9.4277

>NTDB_id=909992 SNE23_RS07670 WP_076867523.1 1460924..1461526(-) (recU) [Bacillus sp. RA(2023)]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCSYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=909992 SNE23_RS07670 WP_076867523.1 1460924..1461526(-) (recU) [Bacillus sp. RA(2023)]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACGAATGAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGAAGAAAATCAATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCGTGCAGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625