Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SM123_RS09975 Genome accession   NZ_CP139419
Coordinates   2059417..2060448 (-) Length   343 a.a.
NCBI ID   WP_320910010.1    Uniprot ID   -
Organism   Streptococcus lingualis strain S5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2054417..2065448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS09935 (SM123_09935) - 2054557..2055288 (-) 732 WP_320909533.1 type II CAAX endopeptidase family protein -
  SM123_RS09940 (SM123_09940) - 2055361..2056554 (-) 1194 WP_023919646.1 acetate kinase -
  SM123_RS09945 (SM123_09945) comYH 2056606..2057559 (-) 954 WP_049505971.1 class I SAM-dependent methyltransferase Machinery gene
  SM123_RS09950 (SM123_09950) comGG 2057590..2058057 (-) 468 WP_320909534.1 competence type IV pilus minor pilin ComGG -
  SM123_RS09955 (SM123_09955) comGF/cglF 2058014..2058466 (-) 453 WP_151190960.1 competence type IV pilus minor pilin ComGF Machinery gene
  SM123_RS09960 (SM123_09960) comGE 2058456..2058743 (-) 288 WP_151190959.1 competence type IV pilus minor pilin ComGE -
  SM123_RS09965 (SM123_09965) comYD 2058709..2059113 (-) 405 WP_269796580.1 competence type IV pilus minor pilin ComGD Machinery gene
  SM123_RS09970 (SM123_09970) comYC 2059103..2059420 (-) 318 WP_101770912.1 competence type IV pilus major pilin ComGC Machinery gene
  SM123_RS09975 (SM123_09975) comYB 2059417..2060448 (-) 1032 WP_320910010.1 competence type IV pilus assembly protein ComGB Machinery gene
  SM123_RS09980 (SM123_09980) comYA 2060381..2061322 (-) 942 WP_320909535.1 competence type IV pilus ATPase ComGA Machinery gene
  SM123_RS09985 (SM123_09985) - 2061410..2061799 (-) 390 WP_037608454.1 DUF1033 family protein -
  SM123_RS09990 (SM123_09990) - 2062020..2063123 (-) 1104 WP_049475202.1 glycosyl hydrolase family 8 -
  SM123_RS09995 (SM123_09995) - 2063132..2064442 (-) 1311 WP_049472878.1 glycosyltransferase -
  SM123_RS10000 (SM123_10000) - 2064435..2064575 (-) 141 WP_003009749.1 hypothetical protein -
  SM123_RS10005 (SM123_10005) - 2064585..2065373 (-) 789 WP_023919656.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 39411.34 Da        Isoelectric Point: 9.7516

>NTDB_id=909570 SM123_RS09975 WP_320910010.1 2059417..2060448(-) (comYB) [Streptococcus lingualis strain S5]
MSWLNRDISSWLRPKPKKLSTAKQKQIIELFLNLYSSGFHLSEIVDFLDRSHLVESRLVSQMRDDLSRGRSFSEMMAGIG
FSDAVTTQLSLAERHGNLILSLEKISAYLENMRKVKKKLIEVSTYPLILLGFLVLIMLGLRNYLLPQMDAQNIGTQLISS
FPQLFLVLGAGLVTFFLLGFLYYRKSGKINVFRTLSHLPFGKGMIQAYLTAYYAREWGNLIGQGLELSQIFSMMQDQKSQ
LFQEIGRDLALSLDRGQSFSETVRGYPFFKKELPLMIEYGEVKSKLGSELEIYAEKTWEDFFRRVHKAMNVIQPLVFVFV
ALVIVLLYAAMLLPIYQNMEVHL

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=909570 SM123_RS09975 WP_320910010.1 2059417..2060448(-) (comYB) [Streptococcus lingualis strain S5]
ATCTCTTGGCTCAATCGGGATATATCCAGCTGGCTCAGGCCCAAGCCGAAAAAATTATCTACCGCTAAACAAAAGCAAAT
TATTGAATTGTTTTTGAATCTTTATTCGAGTGGTTTTCATCTGTCTGAGATCGTCGATTTTCTGGATCGCTCCCACCTAG
TGGAGAGTCGTTTGGTTTCCCAGATGCGAGATGATCTCTCGCGGGGCCGTAGTTTTTCAGAGATGATGGCGGGGATCGGT
TTTTCAGATGCAGTGACGACACAGCTGTCTCTCGCTGAGCGCCATGGCAATCTTATATTGAGCTTGGAGAAAATCAGTGC
TTACCTAGAAAACATGCGCAAGGTCAAGAAAAAGCTGATTGAGGTGAGCACTTATCCTCTTATCTTGCTTGGCTTTTTAG
TTCTGATTATGCTAGGCTTGCGCAATTACTTGCTTCCTCAAATGGATGCTCAAAATATTGGGACGCAATTGATCAGTTCC
TTCCCCCAACTCTTTTTGGTCTTAGGAGCGGGACTGGTGACCTTCTTCTTACTCGGCTTTCTCTATTATCGAAAGTCAGG
CAAGATCAACGTTTTTAGAACCTTGTCTCATCTGCCTTTCGGAAAAGGCATGATTCAAGCTTATTTGACAGCCTATTATG
CCAGAGAATGGGGCAATCTGATTGGGCAAGGATTGGAGTTGTCTCAGATTTTTTCCATGATGCAGGACCAAAAATCCCAG
CTTTTTCAAGAAATTGGAAGGGACTTAGCTCTTTCTTTAGACCGTGGCCAGTCCTTTTCAGAGACGGTCAGGGGGTATCC
TTTTTTCAAAAAAGAATTGCCCCTTATGATTGAATATGGTGAAGTCAAATCAAAGCTCGGAAGTGAACTAGAGATCTATG
CTGAAAAAACATGGGAAGATTTCTTTCGTCGGGTTCACAAGGCCATGAATGTGATACAACCCTTGGTGTTTGTCTTTGTA
GCTCTTGTGATTGTCTTACTCTATGCAGCCATGTTACTGCCGATTTATCAAAATATGGAGGTTCATTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(214-334)

Type II secretion system (T2SS), protein F (T2SSF)

(28-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

65.306

100

0.653
  comGB/cglB Streptococcus mitis SK321

66.369

97.959

0.65
  comGB/cglB Streptococcus mitis NCTC 12261

65.774

97.959

0.644
  comGB/cglB Streptococcus pneumoniae TIGR4

65.476

97.959

0.641
  comGB/cglB Streptococcus pneumoniae R6

65.476

97.959

0.641
  comGB/cglB Streptococcus pneumoniae Rx1

65.476

97.959

0.641
  comGB/cglB Streptococcus pneumoniae D39

65.476

97.959

0.641
  comYB Streptococcus mutans UA159

58.166

100

0.592
  comYB Streptococcus mutans UA140

58.166

100

0.592
  comGB Lactococcus lactis subsp. cremoris KW2

48.961

98.251

0.481