Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SM123_RS02575 Genome accession   NZ_CP139419
Coordinates   565249..565746 (+) Length   165 a.a.
NCBI ID   WP_003008622.1    Uniprot ID   V8BCW4
Organism   Streptococcus lingualis strain S5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 560249..570746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS02555 (SM123_02555) - 562305..562712 (-) 408 WP_049482999.1 hypothetical protein -
  SM123_RS02560 (SM123_02560) - 562693..563595 (-) 903 WP_320909772.1 phosphodiester glycosidase family protein -
  SM123_RS02565 (SM123_02565) - 563582..564634 (-) 1053 WP_320909773.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  SM123_RS02570 (SM123_02570) rpsF 564938..565228 (+) 291 WP_003005040.1 30S ribosomal protein S6 -
  SM123_RS02575 (SM123_02575) ssbA 565249..565746 (+) 498 WP_003008622.1 single-stranded DNA-binding protein Machinery gene
  SM123_RS02580 (SM123_02580) rpsR 565788..566027 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SM123_RS02585 (SM123_02585) - 566284..566805 (+) 522 WP_049482988.1 GNAT family N-acetyltransferase -
  SM123_RS02590 (SM123_02590) - 566840..567517 (-) 678 WP_049482986.1 DUF1129 domain-containing protein -
  SM123_RS02595 (SM123_02595) - 567545..568489 (-) 945 WP_129299821.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17919.68 Da        Isoelectric Point: 4.9371

>NTDB_id=909521 SM123_RS02575 WP_003008622.1 565249..565746(+) (ssbA) [Streptococcus lingualis strain S5]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRAAREGHAGGGYSSGNGGFAGNATPSFGGSEPSNAAPNFGREENPFGANPMDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=909521 SM123_RS02575 WP_003008622.1 565249..565746(+) (ssbA) [Streptococcus lingualis strain S5]
ATGATTAACAATGTTGTACTTGTCGGTCGTATGACCCGTGATGCTGAACTTCGCTACACTCCAAGCAATCAAGCAGTTGC
TACTTTCAGCCTAGCTGTCAACCGCAACTTCAAGAGTCAAAATGGAGAGCGCGAAGCCGATTTCATCAACTGTGTGATCT
GGCGTCAGCAAGCAGAAAACTTAGCCAACTGGGCTAAGAAAGGTGCTTTGATTGGGATTACCGGTCGCATTCAAACACGT
AATTACGAAAACCAGCAAGGTCAACGTGTTTATGTCACTGAAGTCGTAGCAGACAGCTTCCAACTATTGGAAAGCCGTGC
AGCACGCGAAGGGCATGCAGGTGGTGGCTATTCATCAGGCAACGGTGGTTTTGCTGGAAATGCAACCCCAAGTTTTGGTG
GATCTGAACCAAGCAATGCAGCGCCAAACTTTGGTCGTGAAGAAAATCCATTTGGAGCGAATCCAATGGATATCTCAGAC
GACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8BCW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.857

100

0.624
  ssb Latilactobacillus sakei subsp. sakei 23K

58.824

100

0.606
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.137

70.909

0.37
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.061

0.364
  ssbB/cilA Streptococcus pneumoniae R6

51.282

70.909

0.364
  ssbB/cilA Streptococcus mitis SK321

51.282

70.909

0.364
  ssbB/cilA Streptococcus mitis NCTC 12261

51.282

70.909

0.364
  ssbB/cilA Streptococcus pneumoniae Rx1

51.282

70.909

0.364
  ssbB/cilA Streptococcus pneumoniae D39

51.282

70.909

0.364