Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SOI79_RS05790 Genome accession   NZ_CP139266
Coordinates   1220232..1221458 (+) Length   408 a.a.
NCBI ID   WP_002114869.1    Uniprot ID   A0A009NCN6
Organism   Acinetobacter pittii strain HUM14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1215232..1226458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI79_RS05755 (SOI79_05755) rimP 1215903..1216427 (-) 525 WP_002114922.1 ribosome maturation factor RimP -
  SOI79_RS05775 (SOI79_05775) secG 1217065..1217394 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  SOI79_RS05780 (SOI79_05780) tpiA 1217407..1218201 (-) 795 WP_284088163.1 triose-phosphate isomerase -
  SOI79_RS05785 (SOI79_05785) pilB 1218493..1220205 (+) 1713 WP_284088164.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SOI79_RS05790 (SOI79_05790) pilC 1220232..1221458 (+) 1227 WP_002114869.1 type II secretion system F family protein Machinery gene
  SOI79_RS05795 (SOI79_05795) pilD 1221458..1222318 (+) 861 WP_017481949.1 prepilin peptidase Machinery gene
  SOI79_RS05800 (SOI79_05800) coaE 1222320..1222916 (+) 597 WP_284088165.1 dephospho-CoA kinase -
  SOI79_RS05805 (SOI79_05805) - 1222913..1223827 (-) 915 WP_032038060.1 DMT family transporter -
  SOI79_RS05810 (SOI79_05810) rlmB 1223863..1224612 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SOI79_RS05815 (SOI79_05815) - 1224715..1225041 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  SOI79_RS05820 (SOI79_05820) - 1225118..1226428 (-) 1311 WP_284088166.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45041.48 Da        Isoelectric Point: 9.8207

>NTDB_id=908514 SOI79_RS05790 WP_002114869.1 1220232..1221458(+) (pilC) [Acinetobacter pittii strain HUM14]
MTVKKAQMMPTFAYEGVDRKGIKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=908514 SOI79_RS05790 WP_002114869.1 1220232..1221458(+) (pilC) [Acinetobacter pittii strain HUM14]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCATAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTGTTCAAGAAGAAAGTATCAACGCTCGATATCACGATTTTTACTAGGCAACTTGCAACC
ATGATGAAAGCAGGTGTGCCACTGGTACAAGGCTTTGAAATTGTAGCGGAAGGTTTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGCGGTAGTACCTTTGCTTCAGCTTTAAGAAAGTATCCTCAACACTTCGATA
ATTTGTTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTTATTATGATTATTGTGATTGGAGCAGTCATTGCT
GCCTTTTTGGAAGCTAAAAAGCGAAGCAAGAAGTTTCGTGATGGCTTAGATAAACTTACACTGAAACTACCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCACTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACTGGCCAACAACTCCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGTGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NCN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365