Detailed information NTG0090845

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: NC3_RS16355
• Genome accession: NZ_AP025264
• Coordinates: 3181052..3181738 (-)
• Length: 228 a.a.
• NCBI ID: WP_182488940.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain NC3
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3176052..3186738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NC3_RS16320 (NC3_31690)	fliW	3176188..3176622 (-)	435	WP_025208061.1	flagellar assembly protein FliW	-
NC3_RS16325 (NC3_31700)	-	3176651..3177229 (-)	579	WP_099496870.1	DUF6470 family protein	-
NC3_RS16330 (NC3_31710)	flgL	3177276..3178187 (-)	912	WP_008348257.1	flagellar hook-associated protein FlgL	-
NC3_RS16335 (NC3_31720)	flgK	3178196..3179716 (-)	1521	WP_099496871.1	flagellar hook-associated protein FlgK	-
NC3_RS16340 (NC3_31730)	-	3179732..3180214 (-)	483	WP_007499977.1	flagellar protein FlgN	-
NC3_RS16345 (NC3_31740)	flgM	3180233..3180496 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
NC3_RS16350 (NC3_31750)	-	3180576..3180995 (-)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
NC3_RS16355 (NC3_31760)	comFC	3181052..3181738 (-)	687	WP_182488940.1	ComF family protein	Machinery gene
NC3_RS16360 (NC3_31770)	-	3181735..3182028 (-)	294	WP_099496873.1	late competence development ComFB family protein	-
NC3_RS16365 (NC3_31780)	comFA	3182093..3183472 (-)	1380	WP_157774431.1	DEAD/DEAH box helicase	Machinery gene
NC3_RS16370 (NC3_31790)	-	3183592..3184434 (-)	843	WP_007499966.1	DegV family protein	-
NC3_RS16375 (NC3_31800)	degU	3184646..3185335 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
NC3_RS16380 (NC3_31810)	degS	3185400..3186575 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26186.81 Da
• Isoelectric Point: 10.3820

>NTDB_id=90845 NC3_RS16355 WP_182488940.1 3181052..3181738(-) (comFC) [Bacillus altitudinis strain NC3]
MICPICESHFVAAFTWKSFLLLNEDRLCVACKNHLMKIQGPTCPKCGRAQSNDQLCHDCSRWNKRRDFAEILVMNRSVYA
YNDFMKDVLARFKFRGDTALADLFKKDVHSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVH
QRKQSKKRKNERLHQQKLFQLRQANPIVLKDIILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=90845 NC3_RS16355 WP_182488940.1 3181052..3181738(-) (comFC) [Bacillus altitudinis strain NC3]
TTGATTTGTCCAATTTGTGAGAGCCATTTTGTGGCTGCTTTTACATGGAAATCATTCCTACTATTAAATGAAGATCGTTT
ATGTGTAGCATGTAAGAACCACCTCATGAAGATTCAAGGTCCTACTTGTCCCAAATGCGGAAGAGCGCAATCAAATGATC
AATTGTGTCATGATTGTTCAAGGTGGAATAAACGACGGGATTTTGCTGAGATTCTTGTAATGAATCGGTCTGTTTATGCT
TACAACGACTTTATGAAAGATGTTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGA
TGTACATTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTGCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAA
AGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACAT
CAAAGGAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAAGTTGTTTCAATTAAGGCAGGCAAACCCGAT
CGTTCTAAAGGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAG
ACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (165-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.565	100	0.5
comFC/cflB	Streptococcus mitis SK321	38.428	100	0.386
comFC/cflB	Streptococcus mitis NCTC 12261	37.991	100	0.382
comFC/cflB	Streptococcus pneumoniae TIGR4	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae Rx1	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae D39	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae R6	37.118	100	0.373