Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NC3_RS16375 Genome accession   NZ_AP025264
Coordinates   3184646..3185335 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain NC3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3179646..3190335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC3_RS16340 (NC3_31730) - 3179732..3180214 (-) 483 WP_007499977.1 flagellar protein FlgN -
  NC3_RS16345 (NC3_31740) flgM 3180233..3180496 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NC3_RS16350 (NC3_31750) - 3180576..3180995 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  NC3_RS16355 (NC3_31760) comFC 3181052..3181738 (-) 687 WP_182488940.1 ComF family protein Machinery gene
  NC3_RS16360 (NC3_31770) - 3181735..3182028 (-) 294 WP_099496873.1 late competence development ComFB family protein -
  NC3_RS16365 (NC3_31780) comFA 3182093..3183472 (-) 1380 WP_157774431.1 DEAD/DEAH box helicase Machinery gene
  NC3_RS16370 (NC3_31790) - 3183592..3184434 (-) 843 WP_007499966.1 DegV family protein -
  NC3_RS16375 (NC3_31800) degU 3184646..3185335 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NC3_RS16380 (NC3_31810) degS 3185400..3186575 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NC3_RS16385 (NC3_31820) - 3186797..3187465 (+) 669 WP_017357860.1 YigZ family protein -
  NC3_RS16390 (NC3_31830) - 3187450..3188547 (+) 1098 WP_007499958.1 LCP family protein -
  NC3_RS16395 (NC3_31840) - 3188585..3189652 (-) 1068 WP_007499956.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=90847 NC3_RS16375 WP_008348273.1 3184646..3185335(-) (degU) [Bacillus altitudinis strain NC3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=90847 NC3_RS16375 WP_008348273.1 3184646..3185335(-) (degU) [Bacillus altitudinis strain NC3]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGACACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment