Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NC3_RS16365 Genome accession   NZ_AP025264
Coordinates   3182093..3183472 (-) Length   459 a.a.
NCBI ID   WP_157774431.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NC3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3177093..3188472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC3_RS16330 (NC3_31710) flgL 3177276..3178187 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  NC3_RS16335 (NC3_31720) flgK 3178196..3179716 (-) 1521 WP_099496871.1 flagellar hook-associated protein FlgK -
  NC3_RS16340 (NC3_31730) - 3179732..3180214 (-) 483 WP_007499977.1 flagellar protein FlgN -
  NC3_RS16345 (NC3_31740) flgM 3180233..3180496 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NC3_RS16350 (NC3_31750) - 3180576..3180995 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  NC3_RS16355 (NC3_31760) comFC 3181052..3181738 (-) 687 WP_182488940.1 ComF family protein Machinery gene
  NC3_RS16360 (NC3_31770) - 3181735..3182028 (-) 294 WP_099496873.1 late competence development ComFB family protein -
  NC3_RS16365 (NC3_31780) comFA 3182093..3183472 (-) 1380 WP_157774431.1 DEAD/DEAH box helicase Machinery gene
  NC3_RS16370 (NC3_31790) - 3183592..3184434 (-) 843 WP_007499966.1 DegV family protein -
  NC3_RS16375 (NC3_31800) degU 3184646..3185335 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NC3_RS16380 (NC3_31810) degS 3185400..3186575 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NC3_RS16385 (NC3_31820) - 3186797..3187465 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52496.06 Da        Isoelectric Point: 9.9737

>NTDB_id=90846 NC3_RS16365 WP_157774431.1 3182093..3183472(-) (comFA) [Bacillus altitudinis strain NC3]
MNLEKAMELSHKLQSRHLLPVECQCTQSELEWLENQGFIHRTPAVDRVASGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSIDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=90846 NC3_RS16365 WP_157774431.1 3182093..3183472(-) (comFA) [Bacillus altitudinis strain NC3]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTGTTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCAGTCGATAGGGTGGCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCGCCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATCGATGAA
CGGCTTCAGTTTGCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAAGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTACCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGG
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTCTTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTTCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.125

97.386

0.508

Multiple sequence alignment