Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   SOI70_RS00530 Genome accession   NZ_CP139258
Coordinates   98598..99656 (+) Length   352 a.a.
NCBI ID   WP_005067078.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 93598..104656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI70_RS00515 (SOI70_00515) - 94659..94991 (+) 333 WP_002116981.1 hypothetical protein -
  SOI70_RS00520 (SOI70_00520) rrmA 94994..95818 (+) 825 WP_005078486.1 putative RNA methyltransferase -
  SOI70_RS00525 (SOI70_00525) ponA 95875..98436 (-) 2562 WP_005078484.1 penicillin-binding protein PBP1a -
  SOI70_RS00530 (SOI70_00530) pilM 98598..99656 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI70_RS00535 (SOI70_00535) pilN 99656..100297 (+) 642 WP_005078482.1 PilN domain-containing protein Machinery gene
  SOI70_RS00540 (SOI70_00540) pilO 100294..101073 (+) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI70_RS00545 (SOI70_00545) pilP 101085..101612 (+) 528 WP_005078479.1 pilus assembly protein PilP Machinery gene
  SOI70_RS00550 (SOI70_00550) pilQ 101675..103801 (+) 2127 WP_005078477.1 type IV pilus secretin PilQ Machinery gene
  SOI70_RS00555 (SOI70_00555) aroK 103813..104382 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39068.65 Da        Isoelectric Point: 4.4657

>NTDB_id=908408 SOI70_RS00530 WP_005067078.1 98598..99656(+) (pilM) [Acinetobacter pittii strain HUM3]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALTPLPENSVVEKNILNPEAVAEALERAMNLANPHTTNAAI
AVPTSTVIHKTIEMDADMNDDEREVQIRLDAEQYIPFPLDEVSLDFEVLPDRLPNPNRVNVLLVATRTENVETRVEVLEL
VDLTPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
AGRAKKERSLPDDYDIEILEPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=908408 SOI70_RS00530 WP_005067078.1 98598..99656(+) (pilM) [Acinetobacter pittii strain HUM3]
GTGCTCAGGTTATATCGTAAACCGAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTTAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTAACGCCTTTACCTGAGAACAGTGTAGTTGAAAAAAATA
TCTTGAATCCAGAAGCAGTTGCAGAAGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCATACCACTAACGCTGCAATT
GCTGTTCCAACATCGACGGTTATTCATAAAACCATCGAAATGGATGCAGATATGAACGATGATGAACGTGAAGTTCAGAT
TCGATTAGATGCGGAGCAATATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTTTGAGGTTTTACCAGATCGACTGC
CGAATCCAAATCGTGTGAATGTACTTTTAGTCGCAACACGAACAGAAAATGTTGAAACACGTGTAGAAGTATTGGAACTG
GTTGATTTAACGCCTAAGCTTGCTGATGTTGAAAGTTATGCTGTCGAGCGTGCTTTTAGTGTGTTTGCTGATAGCTTACC
CATGGGTGCAAATACCATTGGTATTTTAGATATTGGCCATACCATGACCACATTATCGGTTATGCAAAATGGCAAAATCA
TTTATACCCGTGAACAAGTCTTTGGCGGTAAACAGCTTACTTTGGAAATTCAAAGCCGTTACGGTTTGTCATTAGAAGAA
GCGGGACGCGCTAAAAAAGAACGTTCTTTGCCAGATGATTATGACATCGAAATCTTAGAACCATTTTTAGATGCTGTAGT
TCAGCAAGCTGCTAGATCTCTACAATTTTTCTTCTCTTCATCCCAATTCAATGAAATTGACCATATTTTGCTAGCGGGTG
GCAATGCCAACATTCCAGGGCTTGCTAAATTATTGCAGCAGAAACTCGGTTACCGAGTCACTATTGCCAATCCATTTTTA
CAAATGGGTTTCTCTCCTCAAGTCGACGTTCAAAAAATTGAAAATGATGCTTCTTCATTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

96.307

100

0.963
  comM Acinetobacter nosocomialis M2

96.307

100

0.963
  comM Acinetobacter baylyi ADP1

81.25

100

0.813
  pilM Legionella pneumophila strain ERS1305867

41.808

100

0.42