Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   SOI70_RS00545 Genome accession   NZ_CP139258
Coordinates   101085..101612 (+) Length   175 a.a.
NCBI ID   WP_005078479.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 96085..106612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI70_RS00530 (SOI70_00530) pilM 98598..99656 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI70_RS00535 (SOI70_00535) pilN 99656..100297 (+) 642 WP_005078482.1 PilN domain-containing protein Machinery gene
  SOI70_RS00540 (SOI70_00540) pilO 100294..101073 (+) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI70_RS00545 (SOI70_00545) pilP 101085..101612 (+) 528 WP_005078479.1 pilus assembly protein PilP Machinery gene
  SOI70_RS00550 (SOI70_00550) pilQ 101675..103801 (+) 2127 WP_005078477.1 type IV pilus secretin PilQ Machinery gene
  SOI70_RS00555 (SOI70_00555) aroK 103813..104382 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI70_RS00560 (SOI70_00560) aroB 104411..105493 (+) 1083 WP_005078475.1 3-dehydroquinate synthase -
  SOI70_RS00565 (SOI70_00565) - 105510..106379 (+) 870 WP_005078473.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19243.39 Da        Isoelectric Point: 9.7299

>NTDB_id=908411 SOI70_RS00545 WP_005078479.1 101085..101612(+) (pilP) [Acinetobacter pittii strain HUM3]
MKLKKILLSLGIGLVLVGCDSRIDAVNQQMADIRNQPPQAIESAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=908411 SOI70_RS00545 WP_005078479.1 101085..101612(+) (pilP) [Acinetobacter pittii strain HUM3]
ATGAAACTAAAGAAAATTTTACTTTCTCTGGGGATAGGCTTGGTTTTGGTTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAACAAATGGCCGATATACGTAATCAGCCACCACAAGCTATAGAATCGGCACCTGTTTTTACACCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTGAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAATAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTGCAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATTTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

87.429

100

0.874
  comL Acinetobacter baylyi ADP1

73.373

96.571

0.709