Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   SOI70_RS00540 Genome accession   NZ_CP139258
Coordinates   100294..101073 (+) Length   259 a.a.
NCBI ID   WP_005067082.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 95294..106073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI70_RS00525 (SOI70_00525) ponA 95875..98436 (-) 2562 WP_005078484.1 penicillin-binding protein PBP1a -
  SOI70_RS00530 (SOI70_00530) pilM 98598..99656 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI70_RS00535 (SOI70_00535) pilN 99656..100297 (+) 642 WP_005078482.1 PilN domain-containing protein Machinery gene
  SOI70_RS00540 (SOI70_00540) pilO 100294..101073 (+) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI70_RS00545 (SOI70_00545) pilP 101085..101612 (+) 528 WP_005078479.1 pilus assembly protein PilP Machinery gene
  SOI70_RS00550 (SOI70_00550) pilQ 101675..103801 (+) 2127 WP_005078477.1 type IV pilus secretin PilQ Machinery gene
  SOI70_RS00555 (SOI70_00555) aroK 103813..104382 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI70_RS00560 (SOI70_00560) aroB 104411..105493 (+) 1083 WP_005078475.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29421.52 Da        Isoelectric Point: 5.7456

>NTDB_id=908410 SOI70_RS00540 WP_005067082.1 100294..101073(+) (pilO) [Acinetobacter pittii strain HUM3]
MSPDELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFIVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAVENQNNSDPQVINGESQI
NASDSRNAHIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=908410 SOI70_RS00540 WP_005067082.1 100294..101073(+) (pilO) [Acinetobacter pittii strain HUM3]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTTCT
TCAGCAATTTAACACGCTCGATATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTACTGGCTTTAGGGTATTTTGTTGCTATTCAACCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAGCTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
GATGCATGATTTTATTGTTGAAGCTGCTCCTGTTAAGGATGGGAAGTCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGCTATATGGGCGCGGTTGAAAACCAAAATAACAGTGATCCTCAAGTAATAAATGGTGAAAGTCAGATA
AACGCCTCCGATAGCCGTAATGCACATATTCCTTCTATAAAGAAGTCAAAGCGAAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.732

86.486

0.776
  comO Acinetobacter baylyi ADP1

71.983

89.575

0.645