Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SOI70_RS00550 Genome accession   NZ_CP139258
Coordinates   101675..103801 (+) Length   708 a.a.
NCBI ID   WP_005078477.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 96675..108801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI70_RS00530 (SOI70_00530) pilM 98598..99656 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI70_RS00535 (SOI70_00535) pilN 99656..100297 (+) 642 WP_005078482.1 PilN domain-containing protein Machinery gene
  SOI70_RS00540 (SOI70_00540) pilO 100294..101073 (+) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI70_RS00545 (SOI70_00545) pilP 101085..101612 (+) 528 WP_005078479.1 pilus assembly protein PilP Machinery gene
  SOI70_RS00550 (SOI70_00550) pilQ 101675..103801 (+) 2127 WP_005078477.1 type IV pilus secretin PilQ Machinery gene
  SOI70_RS00555 (SOI70_00555) aroK 103813..104382 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI70_RS00560 (SOI70_00560) aroB 104411..105493 (+) 1083 WP_005078475.1 3-dehydroquinate synthase -
  SOI70_RS00565 (SOI70_00565) - 105510..106379 (+) 870 WP_005078473.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76703.15 Da        Isoelectric Point: 5.7456

>NTDB_id=908412 SOI70_RS00550 WP_005078477.1 101675..103801(+) (pilQ) [Acinetobacter pittii strain HUM3]
MNQVFRQFSMGAVAIAIMQVASAQVSMTNIVPMQIAGQGTEIRVIFNGLPPQPQAYQLENPSRLILDFNKAQQNLTESKV
AIGTDEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQVVAKPVSASAMQTQGVSNIGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVKTLGSKIPTHLAKRLNVNDFATPVSTIESYNDKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKSVNISSKPANYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDEAKALAQTIKLAPIQTDYIRLNYAKAADVLKLIEETRDGKTAVANRTAGSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIDLIDVQIKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVG
GSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQPARVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVNNGETVILGGVFEQTTSNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=908412 SOI70_RS00550 WP_005078477.1 101675..103801(+) (pilQ) [Acinetobacter pittii strain HUM3]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGAGCTGTGGCGATTGCAATTATGCAGGTTGCGTCTGCACAGGTCAGCAT
GACTAATATTGTACCGATGCAAATAGCGGGTCAGGGAACAGAAATTCGAGTGATATTTAATGGCTTGCCACCGCAACCAC
AAGCATATCAGCTTGAGAATCCTTCACGTTTGATTTTAGACTTTAATAAAGCGCAGCAGAATTTAACAGAGTCAAAAGTG
GCGATTGGAACGGATGAAGCGAGTTCGGTCGATGTAAGCTCTGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
GGCAGGTGCTTTTACTACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGCGCAAGTTGTAGCTAAACCTG
TATCAGCAAGTGCAATGCAAACCCAAGGTGTTTCAAACATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGTCTTATTGTT
ATTGACCTGTTGGGGAGTAATACCCCTGTTGATGTGCAACAACAAGGCAGCAAAGTTGTAGTAAAAACTTTGGGTTCTAA
AATTCCTACTCATTTAGCTAAGCGCTTAAATGTAAATGATTTTGCAACGCCTGTTTCGACCATTGAATCTTATAATGATA
AAGGCAACGGTGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCGGAAAATAAATTAACCATC
AGCCTCAAGCGTCCTCAAGATAAAAGTGTAAACATTTCATCTAAACCAGCTAATTATTCTGGTAATAAGCTTTCTCTTGA
TTTTCAAGATATTGAAGTTCGTCGCGTTTTACAATTACTTGCTGATTTTACTGGCATTAATATGGTTGCGGCTGACAGTG
TGCAAGGTAACATCACTTTGCGTTTAAAAGATGTTCCATGGGATCAGGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGTAATGTAATTTGGATTGCTCCAGTTGCGGAACTGATCAAGGCAGAAGACGATGAGGCAAAAGC
TTTAGCACAAACTATTAAATTGGCACCGATCCAAACAGATTATATTCGTTTGAATTATGCAAAAGCAGCAGATGTCCTTA
AACTAATTGAAGAGACTCGTGATGGCAAGACAGCTGTCGCAAATCGTACAGCAGGTTCAGACTCTCTTGCTTTAGAAAGC
TTATTAAGCTCAAGAGGTAGTGCTGTTGCCGATACGCGTACTAATACTTTGATTGTAAATGATACAGCCCAAAATATTGA
TAAAGTTCGTAAAATGATTGATTTGATTGATGTACAGATCAAACAAGTCATGGTGGAAGCTCGAATTGTAAGAGCCTCTA
CTTCTTTTACTAAAGAGCTCGGTGTTAAATGGGGAATATTATCGCAAGGGATTACCAACAATAATAATTTATTAGTTGGT
GGTAGCGAAACGACCTTATGGAATTTACGAGAGCCCAAAAAGGATGAGACTACGGGTGGTTATAAATACACGATTGAACG
TCCAGATAACTTAAATGTCGATTTAGGTGTAACCAATCCGGCTGGAAGTATTGCCTTTGGCTTGATTAGTATGTCTGATT
TTATGCTTGATCTCGAACTTTCTGCATTACAAGCTGACGGTTATGGTGAGGTGATTTCTACACCTAAAGTGATGACCGCA
GACAAACAACCTGCGAGAGTGGCAACAGGTCAACAAGTTCCTTATCAAACCACGACGAATTCTGCTGCGGGTGCTACAGC
AAGTACATCATTTAAAGATGCACTATTAAGCCTAGATGTTACCCCGAGCATTACGCCTGACGGTAAAATTCAAATGAAAT
TGGATATTTCTAAGGATTCTGTAGCTGGCGAAGCACCTAATGGTGAATTAATTTTAAATAAAAATAATATTAATACCAAT
GTACTTGTTAATAATGGTGAGACAGTCATTTTAGGAGGGGTGTTTGAGCAGACTACTTCTAATTCACAAACCAAGGTTCC
TTTCTTTGGAGACATTCCTGTAGTTGGGCGTTTATTTAGAAAAGATGTGAAATCTGATGATAAGCAAGAGTTACTGATTT
TCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

AMIN domain (AMIN)

(40-118)

Bacterial type II and III secretion system protein (Secretin)

(542-700)

Secretin and TonB N terminus short domain (STN)

(291-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

84.605

100

0.862
  pilQ Acinetobacter baumannii strain A118

84.466

100

0.86
  comQ Acinetobacter baylyi ADP1

73.883

100

0.747
  pilQ Pseudomonas aeruginosa PAK

39.829

99.294

0.395