Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SOI70_RS00535 Genome accession   NZ_CP139258
Coordinates   99656..100297 (+) Length   213 a.a.
NCBI ID   WP_005078482.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 94656..105297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI70_RS00515 (SOI70_00515) - 94659..94991 (+) 333 WP_002116981.1 hypothetical protein -
  SOI70_RS00520 (SOI70_00520) rrmA 94994..95818 (+) 825 WP_005078486.1 putative RNA methyltransferase -
  SOI70_RS00525 (SOI70_00525) ponA 95875..98436 (-) 2562 WP_005078484.1 penicillin-binding protein PBP1a -
  SOI70_RS00530 (SOI70_00530) pilM 98598..99656 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI70_RS00535 (SOI70_00535) pilN 99656..100297 (+) 642 WP_005078482.1 PilN domain-containing protein Machinery gene
  SOI70_RS00540 (SOI70_00540) pilO 100294..101073 (+) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI70_RS00545 (SOI70_00545) pilP 101085..101612 (+) 528 WP_005078479.1 pilus assembly protein PilP Machinery gene
  SOI70_RS00550 (SOI70_00550) pilQ 101675..103801 (+) 2127 WP_005078477.1 type IV pilus secretin PilQ Machinery gene
  SOI70_RS00555 (SOI70_00555) aroK 103813..104382 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23961.46 Da        Isoelectric Point: 5.4186

>NTDB_id=908409 SOI70_RS00535 WP_005078482.1 99656..100297(+) (pilN) [Acinetobacter pittii strain HUM3]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLV
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTITDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=908409 SOI70_RS00535 WP_005078482.1 99656..100297(+) (pilN) [Acinetobacter pittii strain HUM3]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGCGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGTG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTCACTGT
TGATGTAGGGGAAATGGGTGTGACTATAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.263

100

0.883
  comN Acinetobacter baylyi ADP1

71.078

95.775

0.681