Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SOI71_RS01630 Genome accession   NZ_CP139251
Coordinates   347299..349425 (+) Length   708 a.a.
NCBI ID   WP_104075354.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342299..354425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS01610 (SOI71_01610) pilM 344250..345308 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI71_RS01615 (SOI71_01615) pilN 345308..345949 (+) 642 WP_104075355.1 PilN domain-containing protein Machinery gene
  SOI71_RS01620 (SOI71_01620) pilO 345946..346698 (+) 753 WP_063097770.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI71_RS01625 (SOI71_01625) pilP 346709..347236 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  SOI71_RS01630 (SOI71_01630) pilQ 347299..349425 (+) 2127 WP_104075354.1 type IV pilus secretin PilQ family protein Machinery gene
  SOI71_RS01635 (SOI71_01635) aroK 349437..350006 (+) 570 WP_032004887.1 shikimate kinase AroK -
  SOI71_RS01640 (SOI71_01640) aroB 350035..351117 (+) 1083 WP_044103315.1 3-dehydroquinate synthase -
  SOI71_RS01645 (SOI71_01645) - 351134..352003 (+) 870 WP_104075353.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76689.13 Da        Isoelectric Point: 6.7717

>NTDB_id=908324 SOI71_RS01630 WP_104075354.1 347299..349425(+) (pilQ) [Acinetobacter pittii strain MCR53]
MNHVFRQFSMGAVAIAIMQVASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFNKAQQNFTQSKV
AIGTDEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSVQVVAKPVSASAMQTQGVSNIGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVKTLGSKIPTHLAKRLNVNDFATPVSTIESYNDKGNGVIAIQSTGSYEYMAYQAENKLTI
SLKRPQDKSVNISSKPSNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDEAKALAQTIKLAPIQTDYIRLNYAKAADVLKLIEETRDGKTAVANRTAGSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIDLIDVQIKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVG
GSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQPARVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVNNGATVILGGVFEQTTSNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=908324 SOI71_RS01630 WP_104075354.1 347299..349425(+) (pilQ) [Acinetobacter pittii strain MCR53]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGAGCTGTGGCGATTGCAATTATGCAGGTTGCGTCTGCACAGGTCAGCAT
GACAAATATTGTACCGACGCAAATAGCGGGTCAAGGAACAGAAATTCGAGTTATGTTTAATGGCTTGCCGCCACAACCGC
AAGCATATCAACTTGAAAATCCTTCACGTTTGATTTTAGATTTTAATAAAGCGCAGCAGAATTTCACACAGTCAAAAGTA
GCGATTGGAACGGATGAAGCGAGTTCGGTCGATGTAAGCTCTGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
GGCAGGTGCTTTTACAACTCGTATTGAAGGTAACACTTTTATTTTAAAGATTAATTCTGTGCAAGTTGTAGCTAAACCTG
TATCAGCAAGTGCAATGCAAACCCAAGGTGTTTCAAACATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGTCTTATTGTT
ATTGACCTGTTGGGGAGTAATACCCCTGTTGATGTGCAACAACAAGGCAGCAAAGTTGTAGTAAAAACTTTGGGTTCTAA
AATTCCTACTCATTTAGCTAAGCGCTTAAATGTAAATGATTTTGCAACGCCTGTTTCGACCATTGAATCTTATAATGATA
AAGGCAACGGTGTTATTGCGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCGGAAAATAAATTAACCATC
AGCCTCAAGCGTCCTCAAGATAAAAGTGTAAACATTTCATCTAAACCATCTAATTATTCTGGTAATAAGCTTTCTCTTGA
TTTTCAAGATATTGAAGTTCGTCGCGTTTTACAATTACTTGCTGATTTTACTGGCATTAATATGGTTGCGGCTGACAGTG
TGCAAGGTAACATCACTTTGCGTTTAAAAGATGTTCCATGGGATCAGGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGTAATGTAATTTGGATTGCTCCAGTTGCGGAACTGATCAAGGCAGAAGACGATGAGGCAAAAGC
TTTAGCACAAACTATTAAATTAGCACCGATCCAAACAGATTATATTCGTTTGAATTATGCAAAAGCAGCAGATGTCCTTA
AACTAATTGAAGAGACTCGTGATGGCAAGACAGCTGTCGCAAATCGTACAGCAGGTTCAGACTCTCTTGCTTTAGAAAGC
TTATTAAGCTCAAGAGGTAGTGCTGTTGCCGATACGCGTACTAATACTTTGATTGTAAATGATACAGCCCAAAATATTGA
TAAAGTTCGTAAAATGATTGATTTGATTGATGTACAGATCAAACAAGTCATGGTGGAAGCTCGAATTGTAAGAGCTTCTA
CTTCTTTTACTAAAGAGCTCGGTGTTAAATGGGGAATATTATCGCAAGGGATTACCAACAATAATAATTTATTAGTTGGT
GGTAGCGAAACGACCTTATGGAATTTACGAGAGCCCAAAAAGGATGAGACTACGGGTGGTTATAAATACACGATTGAACG
TCCAGATAACTTAAATGTCGATTTAGGTGTAACCAATCCGGCTGGAAGTATTGCCTTTGGCTTGATTAGTATGTCTGATT
TTATGCTTGATCTCGAACTTTCTGCATTACAAGCTGACGGTTATGGTGAGGTGATTTCTACACCTAAAGTGATGACTGCA
GACAAACAACCTGCGAGAGTGGCAACAGGTCAACAAGTTCCTTATCAAACCACGACGAATTCTGCTGCGGGTGCCACAGC
AAGTACATCATTTAAAGATGCACTATTAAGCCTGGATGTTACCCCGAGCATTACGCCTGACGGTAAAATTCAAATGAAAT
TGGATATTTCTAAGGATTCTGTAGCTGGCGAAGCACCTAATGGTGAATTAATTTTAAATAAAAATAATATTAATACCAAT
GTACTCGTTAATAATGGTGCGACAGTCATTTTAGGAGGGGTGTTTGAGCAGACTACTTCTAATTCACAAACCAAGGTTCC
TTTCTTTGGAGACATTCCTGTCGTTGGACGTTTATTTAGAAAAGATGTGAAATCTGATGATAAGCAAGAGTTACTGATTT
TCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-118)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Bacterial type II and III secretion system protein (Secretin)

(542-700)

Secretin and TonB N terminus short domain (STN)

(291-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

84.327

100

0.859
  pilQ Acinetobacter baumannii strain A118

84.189

100

0.857
  comQ Acinetobacter baylyi ADP1

73.464

100

0.743
  pilQ Pseudomonas aeruginosa PAK

39.093

99.718

0.39