Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   SOI71_RS01625 Genome accession   NZ_CP139251
Coordinates   346709..347236 (+) Length   175 a.a.
NCBI ID   WP_002116864.1    Uniprot ID   A0AAN4MGG3
Organism   Acinetobacter pittii strain MCR53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341709..352236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS01610 (SOI71_01610) pilM 344250..345308 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI71_RS01615 (SOI71_01615) pilN 345308..345949 (+) 642 WP_104075355.1 PilN domain-containing protein Machinery gene
  SOI71_RS01620 (SOI71_01620) pilO 345946..346698 (+) 753 WP_063097770.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI71_RS01625 (SOI71_01625) pilP 346709..347236 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  SOI71_RS01630 (SOI71_01630) pilQ 347299..349425 (+) 2127 WP_104075354.1 type IV pilus secretin PilQ family protein Machinery gene
  SOI71_RS01635 (SOI71_01635) aroK 349437..350006 (+) 570 WP_032004887.1 shikimate kinase AroK -
  SOI71_RS01640 (SOI71_01640) aroB 350035..351117 (+) 1083 WP_044103315.1 3-dehydroquinate synthase -
  SOI71_RS01645 (SOI71_01645) - 351134..352003 (+) 870 WP_104075353.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19265.32 Da        Isoelectric Point: 9.0270

>NTDB_id=908323 SOI71_RS01625 WP_002116864.1 346709..347236(+) (pilP) [Acinetobacter pittii strain MCR53]
MKLKQFSLSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=908323 SOI71_RS01625 WP_002116864.1 346709..347236(+) (pilP) [Acinetobacter pittii strain MCR53]
ATGAAACTTAAACAATTTTCTCTTTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTGAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGAGAGTGCAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCGACTCAGATTGACTTGGTGGAAATTGTCCCTGATGGACGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88.571

100

0.886
  comL Acinetobacter baylyi ADP1

75.152

94.286

0.709