Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   SOI71_RS01620 Genome accession   NZ_CP139251
Coordinates   345946..346698 (+) Length   250 a.a.
NCBI ID   WP_063097770.1    Uniprot ID   A0AB33B7H5
Organism   Acinetobacter pittii strain MCR53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340946..351698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS01605 (SOI71_01605) ponA 341527..344088 (-) 2562 WP_146064300.1 penicillin-binding protein PBP1a -
  SOI71_RS01610 (SOI71_01610) pilM 344250..345308 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI71_RS01615 (SOI71_01615) pilN 345308..345949 (+) 642 WP_104075355.1 PilN domain-containing protein Machinery gene
  SOI71_RS01620 (SOI71_01620) pilO 345946..346698 (+) 753 WP_063097770.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI71_RS01625 (SOI71_01625) pilP 346709..347236 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  SOI71_RS01630 (SOI71_01630) pilQ 347299..349425 (+) 2127 WP_104075354.1 type IV pilus secretin PilQ family protein Machinery gene
  SOI71_RS01635 (SOI71_01635) aroK 349437..350006 (+) 570 WP_032004887.1 shikimate kinase AroK -
  SOI71_RS01640 (SOI71_01640) aroB 350035..351117 (+) 1083 WP_044103315.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28184.00 Da        Isoelectric Point: 4.7712

>NTDB_id=908322 SOI71_RS01620 WP_063097770.1 345946..346698(+) (pilO) [Acinetobacter pittii strain MCR53]
MSPDELHELSLEQAASKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQASFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFVVETAPVKDSKSDIPVLNYSIKAKTYRYMGAVENSEPQEKNASASSVAP
DSSTANTQPK

Nucleotide


Download         Length: 753 bp        

>NTDB_id=908322 SOI71_RS01620 WP_063097770.1 345946..346698(+) (pilO) [Acinetobacter pittii strain MCR53]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAGCAAGCTGCATCTAAGAAAAAAAAGATCACCTTGGAAAAATTTCT
TCAGCAATTTAACACGCTCGATATGAACAGTTATGGCAGTTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCCGTATTGGCTTTGGGGTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAACGAGTTTCGAGAAAAAGACTCAAAATTACGCAATTTGCAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAGCTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCG
ATTACTATTGAAGCAACTGGAGATTATCACGCTTTTGGTGCTTTTGTTAGCAGTATTGCGGCATTACCGCGTATTGTAAC
GATGCATGATTTCGTTGTTGAAACTGCTCCTGTTAAAGATAGCAAATCAGATATTCCTGTGCTTAATTATTCTATTAAAG
CAAAAACTTATCGCTATATGGGCGCTGTAGAAAATTCTGAGCCTCAGGAAAAAAATGCTTCGGCTTCCTCGGTAGCACCT
GATTCTTCTACTGCTAACACACAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

83.6

100

0.836
  comO Acinetobacter baylyi ADP1

70

96

0.672