Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SOI71_RS01615 Genome accession   NZ_CP139251
Coordinates   345308..345949 (+) Length   213 a.a.
NCBI ID   WP_104075355.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340308..350949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS01595 (SOI71_01595) - 340352..340684 (+) 333 WP_068563962.1 hypothetical protein -
  SOI71_RS01600 (SOI71_01600) rrmA 340687..341511 (+) 825 WP_104075356.1 putative RNA methyltransferase -
  SOI71_RS01605 (SOI71_01605) ponA 341527..344088 (-) 2562 WP_146064300.1 penicillin-binding protein PBP1a -
  SOI71_RS01610 (SOI71_01610) pilM 344250..345308 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI71_RS01615 (SOI71_01615) pilN 345308..345949 (+) 642 WP_104075355.1 PilN domain-containing protein Machinery gene
  SOI71_RS01620 (SOI71_01620) pilO 345946..346698 (+) 753 WP_063097770.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI71_RS01625 (SOI71_01625) pilP 346709..347236 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  SOI71_RS01630 (SOI71_01630) pilQ 347299..349425 (+) 2127 WP_104075354.1 type IV pilus secretin PilQ family protein Machinery gene
  SOI71_RS01635 (SOI71_01635) aroK 349437..350006 (+) 570 WP_032004887.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23997.48 Da        Isoelectric Point: 6.4558

>NTDB_id=908321 SOI71_RS01615 WP_104075355.1 345308..345949(+) (pilN) [Acinetobacter pittii strain MCR53]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKALSSLLPRVEDSYGSFVVTVDVGEIGVTTTNDTANTPVSTDKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=908321 SOI71_RS01615 WP_104075355.1 345308..345949(+) (pilN) [Acinetobacter pittii strain MCR53]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAAAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTAACTAAATTCAGTCGAACTGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAATTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTCTGAGTTCGTTGCTTCCTCGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATTGGGGTGACTACAACAAATGATACCGCCAATACGCCTGTAAGTACGGATAAGGAGGTGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

91.542

94.366

0.864
  comN Acinetobacter baylyi ADP1

72.195

96.244

0.695