Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NC3_RS08335 Genome accession   NZ_AP025264
Coordinates   1648731..1649981 (+) Length   416 a.a.
NCBI ID   WP_017367273.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NC3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1643731..1654981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC3_RS08310 (NC3_15940) ymfI 1645142..1645870 (+) 729 WP_048003275.1 elongation factor P 5-aminopentanone reductase -
  NC3_RS08315 (NC3_15950) - 1645944..1646201 (+) 258 WP_008344693.1 DUF3243 domain-containing protein -
  NC3_RS08320 (NC3_15960) - 1646333..1647124 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  NC3_RS08325 (NC3_15970) - 1647148..1648059 (+) 912 WP_008344690.1 helix-turn-helix domain-containing protein -
  NC3_RS08330 (NC3_15980) pgsA 1648133..1648714 (+) 582 WP_008344688.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NC3_RS08335 (NC3_15990) cinA 1648731..1649981 (+) 1251 WP_017367273.1 competence/damage-inducible protein A Machinery gene
  NC3_RS08340 (NC3_16000) recA 1650159..1651202 (+) 1044 WP_007499478.1 recombinase RecA Machinery gene
  NC3_RS08345 (NC3_16010) rny 1651503..1653065 (+) 1563 WP_003211958.1 ribonuclease Y -
  NC3_RS08350 (NC3_16020) - 1653155..1653949 (+) 795 WP_019744184.1 TIGR00282 family metallophosphoesterase -
  NC3_RS08355 (NC3_16030) spoVS 1654152..1654412 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45747.84 Da        Isoelectric Point: 4.8143

>NTDB_id=90821 NC3_RS08335 WP_017367273.1 1648731..1649981(+) (cinA) [Bacillus altitudinis strain NC3]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIANTLDKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILERVGEYFYGYGDTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLFKLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=90821 NC3_RS08335 WP_017367273.1 1648731..1649981(+) (cinA) [Bacillus altitudinis strain NC3]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCGAATTTTATTATCTTCTCAGGGGGTCTTGGACCAACGAAAGATGATTTA
ACAAAAGAAACCATTGCAAATACGCTCGATAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAGTACTT
CCGTAAAACCGGACGTGATATGTCGCCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGATCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTCGGCCTAAAGGAAAAAATCGTGTCTGTTGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAACTCGAAACAGATCTTGAAGATTTAATTGATGCACAGACCAATCCAACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAACGGGTCGGCGAGTACTTCTACGGATATGGTGATACATCTCTTGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTTGAAGGGGCATCATCCATTTTAAACGGCAGTGTGGTTTGTTACACAAATCAAGTCAAGCAGCAAGTGCTGGGC
TGCCGTGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTCGCAGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGACAGCCGGTTGGAAAAGTAT
TTATCGGGCTATCGACAAAAGATCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGTCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTTTCAAATTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.458

99.76

0.743
  cinA Streptococcus mitis SK321

47.506

100

0.481
  cinA Streptococcus mutans UA159

47.837

100

0.478
  cinA Streptococcus mitis NCTC 12261

47.268

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.268

100

0.478
  cinA Streptococcus pneumoniae Rx1

47.031

100

0.476
  cinA Streptococcus pneumoniae R6

47.031

100

0.476
  cinA Streptococcus pneumoniae D39

46.793

100

0.474
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392

Multiple sequence alignment