Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   SON02_RS09115 Genome accession   NZ_CP139211
Coordinates   2090181..2090819 (+) Length   212 a.a.
NCBI ID   WP_135027227.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2085181..2095819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS09080 (SON02_09060) - 2085516..2085794 (+) 279 WP_135027236.1 autorepressor SdpR family transcription factor -
  SON02_RS09085 (SON02_09065) - 2085781..2086383 (+) 603 WP_135027234.1 DUF1648 domain-containing protein -
  SON02_RS09090 (SON02_09070) - 2086778..2087293 (+) 516 WP_135027232.1 isoprenylcysteine carboxyl methyltransferase family protein -
  SON02_RS09095 (SON02_09075) - 2087739..2088146 (+) 408 WP_135027377.1 GNAT family N-acetyltransferase -
  SON02_RS09100 (SON02_09080) - 2088260..2088517 (-) 258 WP_135027375.1 GIY-YIG nuclease family protein -
  SON02_RS09105 (SON02_09085) - 2088525..2089274 (-) 750 WP_135027230.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SON02_RS09110 (SON02_09090) - 2089370..2090116 (+) 747 WP_135027229.1 lysophospholipid acyltransferase family protein -
  SON02_RS09115 (SON02_09095) comEA/celA/cilE 2090181..2090819 (+) 639 WP_135027227.1 helix-hairpin-helix domain-containing protein Machinery gene
  SON02_RS09120 (SON02_09100) comEC/celB 2090803..2093040 (+) 2238 WP_135027225.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SON02_RS09125 (SON02_09105) - 2093745..2095268 (+) 1524 WP_135027223.1 AMP-binding protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 22754.04 Da        Isoelectric Point: 5.3424

>NTDB_id=908084 SON02_RS09115 WP_135027227.1 2090181..2090819(+) (comEA/celA/cilE) [Streptococcus sp. LysM4]
MSEKWIPFLRHYQLLVVVAVGGLVMTVTFFLIAPIRPSGELGRVEELVSSSEQVMEMPISKQSIESLMVDVKGAVKKPGI
YHLSVGSRVHDAVEAAGGLTEAADSKSINLAQKLSDEGVIYVATKEEAISVVPTTRTAQTSSDKGVKEGLVNLNTATEAD
LQTIAGIGTKRATDIIAYRESKGHFQSVDDLKDVPGIGSKSLENIRPYVTVD

Nucleotide


Download         Length: 639 bp        

>NTDB_id=908084 SON02_RS09115 WP_135027227.1 2090181..2090819(+) (comEA/celA/cilE) [Streptococcus sp. LysM4]
ATGTCTGAAAAATGGATACCATTTTTGCGTCACTATCAATTATTGGTTGTGGTAGCTGTAGGGGGGCTTGTGATGACTGT
GACTTTCTTTTTGATAGCTCCAATAAGACCGAGTGGGGAGCTGGGTCGCGTGGAAGAATTAGTAAGTAGCAGCGAACAGG
TAATGGAGATGCCAATTAGTAAGCAGTCCATAGAGAGCCTAATGGTTGATGTCAAAGGCGCAGTCAAGAAACCAGGAATT
TATCATTTGTCAGTAGGTAGTCGTGTTCATGATGCGGTGGAAGCAGCGGGTGGTTTGACAGAGGCTGCTGATTCTAAATC
CATCAATTTAGCTCAGAAGCTGAGTGATGAGGGGGTTATTTACGTAGCAACCAAGGAGGAAGCAATCTCTGTTGTACCTA
CTACAAGGACAGCACAAACAAGTAGCGATAAGGGAGTAAAGGAGGGGCTAGTGAATCTCAATACTGCAACAGAGGCAGAT
TTGCAGACCATTGCAGGTATCGGTACTAAGCGTGCGACAGATATTATTGCCTATCGTGAGAGCAAGGGGCATTTTCAATC
GGTTGATGATTTGAAAGATGTACCTGGAATTGGTAGTAAGAGTCTGGAGAACATTCGTCCTTATGTCACAGTTGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(68-121)

Helix-hairpin-helix motif (HHH_3)

(146-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.085

100

0.495
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

47.727

100

0.495
  comEA/celA/cilE Streptococcus pneumoniae Rx1

46.637

100

0.491
  comEA/celA/cilE Streptococcus pneumoniae D39

46.637

100

0.491
  comEA/celA/cilE Streptococcus pneumoniae R6

46.637

100

0.491
  comEA/celA/cilE Streptococcus mitis SK321

46.119

100

0.476
  comEA Streptococcus thermophilus LMD-9

60.403

70.283

0.425
  comEA Lactococcus lactis subsp. cremoris KW2

36.818

100

0.382