Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SK061_RS10170 Genome accession   NZ_CP139190
Coordinates   1982873..1984123 (+) Length   416 a.a.
NCBI ID   WP_006638100.1    Uniprot ID   M5PCX3
Organism   Bacillus sonorensis strain PMC204     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1977873..1989123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK061_RS10145 (SK061_10145) ymfI 1979170..1979901 (+) 732 WP_006638105.1 elongation factor P 5-aminopentanone reductase -
  SK061_RS10150 (SK061_10150) - 1979971..1980228 (+) 258 WP_006638104.1 DUF3243 domain-containing protein -
  SK061_RS10155 (SK061_10155) - 1980492..1981283 (+) 792 WP_006638103.1 YmfK family protein -
  SK061_RS10160 (SK061_10160) - 1981301..1982209 (+) 909 WP_006638102.1 RodZ family helix-turn-helix domain-containing protein -
  SK061_RS10165 (SK061_10165) pgsA 1982271..1982852 (+) 582 WP_006638101.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SK061_RS10170 (SK061_10170) cinA 1982873..1984123 (+) 1251 WP_006638100.1 competence/damage-inducible protein A Machinery gene
  SK061_RS10175 (SK061_10175) recA 1984305..1985351 (+) 1047 WP_006638099.1 recombinase RecA Machinery gene
  SK061_RS10180 (SK061_10180) rny 1985731..1987290 (+) 1560 WP_006638098.1 ribonuclease Y -
  SK061_RS10185 (SK061_10185) - 1987378..1988175 (+) 798 WP_006638097.1 TIGR00282 family metallophosphoesterase -
  SK061_RS10190 (SK061_10190) spoVS 1988378..1988638 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45416.68 Da        Isoelectric Point: 5.0688

>NTDB_id=907727 SK061_RS10170 WP_006638100.1 1982873..1984123(+) (cinA) [Bacillus sonorensis strain PMC204]
MKLERKAEIIAVGSELLLGQIANTNAQFISKQLAEIGINVFYHTAVGDNPERLKQVIKTAQERSDFIIFSGGLGPTKDDL
TKETIAEVVGRPLQLDEEAFQSIEDYFKKTNRTMSPNNRKQALILEGSDVLPNRFGMAPGMLLEHESRFYMLLPGPPKEL
NPMFENEAKPLILEKLGSKEKIVSRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADPAETERLL
KETEDRILERVGEFFYGYDDTSLVEELAKACVRKGMTLSAAESFTGGLFSSWLTELSGASEYFRGGAVCYTNELKVSAAG
VSEETLNRFGAVSAECAKELAAGIRNKTGSDIGISFTGVAGPNTQEGHPAGKVFIGVSVNGKAEEVHEFMFAGSRSAVRK
RSAKYGCHLLLNVLGK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=907727 SK061_RS10170 WP_006638100.1 1982873..1984123(+) (cinA) [Bacillus sonorensis strain PMC204]
ATGAAACTGGAAAGAAAAGCTGAAATCATTGCCGTCGGTTCAGAGCTTTTGCTTGGGCAAATTGCCAATACGAACGCGCA
GTTTATCAGCAAGCAGCTCGCGGAAATCGGCATCAATGTTTTTTATCATACAGCGGTTGGAGACAATCCCGAACGCTTGA
AGCAAGTGATTAAAACCGCGCAGGAAAGGTCTGATTTCATCATCTTTTCCGGCGGGCTCGGGCCGACGAAAGACGATTTG
ACAAAAGAAACGATCGCCGAGGTCGTCGGACGTCCGCTTCAGCTTGATGAAGAAGCCTTTCAATCGATTGAGGATTATTT
CAAAAAAACGAACCGCACGATGTCACCGAACAATCGGAAGCAGGCACTGATCCTCGAAGGGTCTGATGTATTGCCAAACC
GGTTCGGCATGGCCCCGGGGATGCTTTTGGAGCATGAATCCCGCTTTTACATGCTTCTTCCCGGACCTCCGAAAGAGCTG
AACCCAATGTTTGAAAACGAAGCGAAGCCGCTCATTCTTGAAAAACTGGGCTCAAAGGAAAAAATCGTCTCAAGGGTGCT
TCGGTTCTTCGGAATCGGAGAATCCCAGCTTGAAACGGATTTGGAAGACCTTATTGACGCTCAGACTAACCCGACGATCG
CGCCTTTGGCGGCCGATGGGGAAGTGACCCTCAGGCTGACGGCCAAACACGCGGATCCGGCTGAGACGGAACGCCTTCTT
AAAGAAACGGAAGACCGGATTTTAGAGCGTGTTGGGGAGTTCTTTTACGGATATGACGATACTTCGCTTGTTGAAGAGCT
TGCGAAAGCCTGCGTCCGCAAAGGGATGACGCTGTCTGCCGCGGAAAGCTTTACAGGCGGGCTGTTTTCGAGCTGGCTGA
CGGAGCTCAGCGGAGCCTCCGAATATTTCAGAGGAGGAGCCGTCTGCTACACAAACGAATTGAAAGTTTCAGCGGCAGGA
GTTTCCGAAGAAACGCTGAACCGCTTCGGAGCCGTCAGCGCGGAATGCGCGAAGGAGCTCGCAGCAGGCATCAGAAACAA
AACCGGAAGCGACATCGGCATCAGCTTTACCGGAGTAGCCGGTCCGAATACGCAGGAAGGCCATCCCGCAGGAAAGGTAT
TTATCGGGGTCTCTGTGAACGGCAAAGCAGAAGAGGTGCATGAATTCATGTTTGCCGGCTCCAGATCCGCGGTCAGGAAG
CGTTCCGCCAAATACGGCTGCCATCTGCTGCTGAATGTGCTGGGAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5PCX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

80.435

99.519

0.8
  cinA Streptococcus mitis SK321

45.455

100

0.457
  cinA Streptococcus mitis NCTC 12261

45.455

100

0.457
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

42.175

90.625

0.382