Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   SK090_RS17525 Genome accession   NZ_CP139189
Coordinates   3902510..3902830 (+) Length   106 a.a.
NCBI ID   WP_167573809.1    Uniprot ID   -
Organism   Aeromonas veronii strain FS12001     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3897510..3907830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK090_RS17510 yfbV 3897950..3898390 (-) 441 WP_320545388.1 terminus macrodomain insulation protein YfbV -
  SK090_RS17515 - 3898695..3899897 (+) 1203 WP_005349210.1 acetate kinase -
  SK090_RS17520 pta 3899952..3902132 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  SK090_RS17525 comE1/comEA 3902510..3902830 (+) 321 WP_167573809.1 ComEA family DNA-binding protein Machinery gene
  SK090_RS17530 galU 3902926..3903837 (+) 912 WP_111900684.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SK090_RS17535 - 3904051..3905448 (+) 1398 WP_021231963.1 peptide MFS transporter -
  SK090_RS17540 - 3905513..3906484 (-) 972 WP_320545389.1 response regulator -
  SK090_RS17545 - 3906724..3907422 (+) 699 WP_257687171.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11288.29 Da        Isoelectric Point: 9.9853

>NTDB_id=907690 SK090_RS17525 WP_167573809.1 3902510..3902830(+) (comE1/comEA) [Aeromonas veronii strain FS12001]
MLMKKLSAIMLLACLPLFSQPVLAADKATPKQTTTTAVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=907690 SK090_RS17525 WP_167573809.1 3902510..3902830(+) (comE1/comEA) [Aeromonas veronii strain FS12001]
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGCTGGCCTGCTTGCCACTGTTCAGCCAACCTGTGCTGGCCGCAGATAA
GGCAACGCCCAAGCAAACAACCACGACCGCGGTTGCCAAGGAGTCCGGCAAGCTGAATATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACAGGGACATGATAATAGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

49.107

100

0.519
  comEA/comE1 Glaesserella parasuis strain SC1401

46.903

100

0.5
  comEA Vibrio cholerae strain A1552

47.17

100

0.472
  comEA Vibrio cholerae C6706

47.17

100

0.472
  comEA Vibrio parahaemolyticus RIMD 2210633

43.299

91.509

0.396
  comEA Legionella pneumophila str. Paris

40.404

93.396

0.377
  comEA Legionella pneumophila strain ERS1305867

40.404

93.396

0.377
  comEA Acinetobacter baylyi ADP1

51.316

71.698

0.368
  comEA Vibrio campbellii strain DS40M4

37.143

99.057

0.368