Detailed information NTG0907306

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ABNQ20_RS26170
• Genome accession: NZ_CP158051
• Coordinates: 5645346..5646563 (+)
• Length: 405 a.a.
• NCBI ID: WP_016254080.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain P1110
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5640346..5651563

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNQ20_RS26145 (ABNQ20_26140)	nadC	5641098..5641946 (+)	849	WP_003141348.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ABNQ20_RS26155 (ABNQ20_26150)	-	5642109..5642666 (-)	558	WP_225011032.1	hypothetical protein	-
ABNQ20_RS26160 (ABNQ20_26155)	pilE	5642871..5643410 (-)	540	WP_003141352.1	pilin	Machinery gene
ABNQ20_RS26165 (ABNQ20_26160)	pilB	5643639..5645342 (+)	1704	WP_003141354.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABNQ20_RS26170 (ABNQ20_26165)	pilC	5645346..5646563 (+)	1218	WP_016254080.1	type II secretion system F family protein	Machinery gene
ABNQ20_RS26175 (ABNQ20_26170)	pilD	5646566..5647438 (+)	873	WP_003141356.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
ABNQ20_RS26180 (ABNQ20_26175)	coaE	5647435..5648046 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
ABNQ20_RS26185 (ABNQ20_26180)	yacG	5648043..5648243 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
ABNQ20_RS26190 (ABNQ20_26185)	-	5648280..5648489 (-)	210	WP_003094660.1	hypothetical protein	-
ABNQ20_RS26195 (ABNQ20_26190)	-	5648595..5649284 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
ABNQ20_RS26200 (ABNQ20_26195)	-	5649281..5649751 (-)	471	WP_003094664.1	hypothetical protein	-
ABNQ20_RS26205 (ABNQ20_26200)	-	5649836..5651113 (-)	1278	WP_000610830.1	ISL3 family transposase	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44041.92 Da
• Isoelectric Point: 9.8417

>NTDB_id=907306 ABNQ20_RS26170 WP_016254080.1 5645346..5646563(+) (pilC) [Pseudomonas aeruginosa strain P1110]
MADKALKTSVFIWEGTDKKGSKVKGELAGQNPMLVKAQLRKQGINPLKVRKKGITLFGAGKKIKPMDIALFTRQMSTMMG
AGVPLLQSFDIIGEGFENPNMRKLVDEIKQDVAAGNSLASSLRKKPIYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVIVVALVVSAILLIKVVPQFQSVFANFGAELPAFTQMVINLSEMLQEWWLIVLIGLFAAAFAFR
EAHRRSQKLRDSVDRGLLKLPIIGGILYKSAIARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKNAVTKIKQDVSSGM
QLNFSMRTTNVFPSMAIQMAAIGEESGSLDEMLGKVAGFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide

• Length: 1218 bp

>NTDB_id=907306 ABNQ20_RS26170 WP_016254080.1 5645346..5646563(+) (pilC) [Pseudomonas aeruginosa strain P1110]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCATCTGGGAAGGCACTGATAAGAAAGGCAGCAAGGTCAAAGGAGAGTT
GGCCGGGCAAAACCCTATGCTGGTGAAGGCTCAACTGCGCAAACAGGGTATCAACCCACTAAAGGTCCGCAAGAAAGGTA
TCACCCTGTTTGGGGCAGGGAAGAAGATTAAGCCCATGGACATCGCCCTGTTCACTCGGCAGATGTCTACCATGATGGGT
GCCGGCGTACCGTTACTGCAATCTTTTGACATCATCGGCGAAGGATTCGAAAATCCAAACATGCGCAAGCTAGTCGATGA
GATCAAGCAGGATGTTGCCGCCGGTAACAGCTTAGCCAGTTCACTTCGAAAGAAACCCATTTACTTCGATGATCTCTACT
GCAACCTGGTCGATGCTGGCGAACAGTCCGGTGCTTTGGAGACATTATTGGATCGGGTAGCAACTTATAAAGAAAAGACA
GAATCCCTGAAAGCCAAAATTAAAAAAGCCATGACTTATCCCATTGCAGTAATTGTAGTGGCCCTTGTGGTATCGGCGAT
CCTTCTGATAAAAGTGGTCCCACAGTTCCAGTCCGTATTTGCAAATTTTGGTGCCGAGTTGCCGGCCTTTACTCAAATGG
TCATCAATCTTTCCGAGATGCTTCAAGAGTGGTGGCTCATAGTGCTTATTGGTCTTTTTGCCGCAGCTTTTGCATTTAGG
GAAGCTCATCGGCGCTCGCAAAAACTGAGAGATTCAGTAGATCGGGGCCTGCTGAAACTACCTATCATCGGCGGGATACT
TTACAAATCAGCTATCGCCCGCTACGCCCGAACGCTATCCACTACCTTTGCGGCTGGAGTGCCTCTGGTAGAAGCTCTGG
ACTCCGTTTCCGGAGCAACTGGCAACGTGGTATTCAAGAATGCCGTTACCAAGATCAAACAAGACGTGTCCAGCGGCATG
CAATTGAACTTTTCCATGCGCACCACCAATGTTTTCCCCAGTATGGCTATCCAGATGGCTGCAATTGGCGAGGAATCAGG
TTCGCTAGATGAGATGTTAGGAAAAGTTGCCGGTTTCTATGAGGAAGAAGTCGATAACGCCGTCGACAACCTGACAACGT
TGATGGAGCCGATGATCATGGCCGTGCTCGGCGTACTGGTCGGCGGCCTGATCATCGCTATGTATCTACCGATCTTCCAA
CTGGGTTCCGTTGTGTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	79.753	100	0.798
pilC	Acinetobacter baumannii D1279779	60.891	99.753	0.607
pilC	Acinetobacter baylyi ADP1	59.852	100	0.6
pilC	Legionella pneumophila strain ERS1305867	55.303	97.778	0.541
pilG	Neisseria meningitidis 44/76-A	46.269	99.259	0.459
pilG	Neisseria gonorrhoeae MS11	46.02	99.259	0.457
pilC	Vibrio cholerae strain A1552	42.222	100	0.422
pilC	Vibrio campbellii strain DS40M4	40.909	97.778	0.4
pilC	Thermus thermophilus HB27	38.404	99.012	0.38