Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SDC64_RS01535 Genome accession   NZ_CP139048
Coordinates   307057..309189 (+) Length   710 a.a.
NCBI ID   WP_171055820.1    Uniprot ID   A0AAW4JAF8
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302057..314189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS01515 (SDC64_01515) comM 304059..305117 (+) 1059 WP_004641327.1 pilus assembly protein PilM Machinery gene
  SDC64_RS01520 (SDC64_01520) pilN 305117..305761 (+) 645 WP_004641325.1 PilN domain-containing protein Machinery gene
  SDC64_RS01525 (SDC64_01525) pilO 305758..306468 (+) 711 WP_320532893.1 type 4a pilus biogenesis protein PilO Machinery gene
  SDC64_RS01530 (SDC64_01530) pilP 306468..306995 (+) 528 WP_320532894.1 pilus assembly protein PilP Machinery gene
  SDC64_RS01535 (SDC64_01535) pilQ 307057..309189 (+) 2133 WP_171055820.1 type IV pilus secretin PilQ family protein Machinery gene
  SDC64_RS01540 (SDC64_01540) aroK 309228..309770 (+) 543 WP_005087029.1 shikimate kinase AroK -
  SDC64_RS01545 (SDC64_01545) aroB 309791..310876 (+) 1086 WP_320532895.1 3-dehydroquinate synthase -
  SDC64_RS01550 (SDC64_01550) - 310892..311764 (+) 873 WP_320532896.1 hypothetical protein -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 77348.12 Da        Isoelectric Point: 7.2173

>NTDB_id=906939 SDC64_RS01535 WP_171055820.1 307057..309189(+) (pilQ) [Acinetobacter haemolyticus strain JS-1us]
MNRAFRQFSMGAVAIAVMQVASAQVNMTNIVPMSLADQGTEIRVMFNGLPPQPQAYQLEQPSRLILDFDKAKQTLKQSSI
PVATNEASSVEVAADDQRSRVIVNLKDAGAFTTRVEGNTFILKINSARPAIASPVSATARQVQQGVSNIGFQRGNQGEGL
VVIDLLGSNTPVDVQQQGSKIVVRTMGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEEKSPLKAKSQTYTGNKISLDFQDIEVRRVLQLLADFTNINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPIQSEYIKLSYAKAADILKLIEDSRDGKAGMSNRTANTDSLALE
SLLSPRGSAVADVRTNTLIVNDTAQNIDKIRKMVDLLDVSVKQVMIEARIVRASTDFTREMGVKWGILSQGVTRNNDLLV
GGSDTTLWNLREPKKDSETGGWKYEIERPDNLNVDLGATTAGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKVM
TADKQPAKIESGTKIPYSSSTGAGANAVPKTEFIDATLSLDVTPSITPDGKVMMKLNITKDAPSNPTPTGQLTISKNSID
TNVLVDNGETVVLGGIFEQENISSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=906939 SDC64_RS01535 WP_171055820.1 307057..309189(+) (pilQ) [Acinetobacter haemolyticus strain JS-1us]
ATGAATCGTGCATTCCGTCAATTTTCAATGGGTGCTGTCGCAATAGCAGTGATGCAGGTAGCATCAGCACAAGTGAACAT
GACCAACATTGTGCCAATGAGTTTGGCTGATCAGGGGACTGAAATTCGTGTCATGTTTAATGGTCTGCCACCACAGCCGC
AGGCATATCAACTTGAACAACCCTCTCGTTTGATTTTGGATTTTGATAAAGCTAAACAAACCTTAAAGCAGAGTTCTATA
CCTGTTGCAACCAATGAAGCCAGTTCAGTAGAAGTCGCTGCGGATGACCAGCGTTCTCGCGTGATTGTGAATTTGAAAGA
TGCAGGCGCTTTTACCACACGTGTAGAAGGTAATACTTTTATTCTAAAAATTAATTCTGCGCGTCCTGCTATTGCGAGTC
CTGTATCTGCCACTGCCCGTCAAGTACAACAAGGGGTTTCAAATATTGGTTTCCAACGAGGCAATCAAGGTGAAGGTCTA
GTTGTGATTGATTTATTGGGTAGTAATACGCCAGTAGATGTACAGCAGCAAGGGAGTAAAATCGTTGTGCGGACCATGGG
GAATAAAATTCCGACCCATTTAGCACGTCGTTTAAATACCAATGATTTCGCGACTCCTGTAGCAAGTATTGATGCCTATA
ATGATAAAGGTAATGGTGTGATTACCATTCAGTCTGCGGGTAGTTATGAATACATGGCTTATCAAGCTGAAAATAAACTG
ACGATTAGTTTAAAGCGACCTGAAGAAAAATCACCATTAAAAGCAAAATCTCAAACTTATACTGGCAATAAGATTTCTTT
AGATTTCCAAGATATTGAAGTGCGTCGTGTGCTGCAGTTACTTGCTGATTTTACCAATATCAATATGGTGGCTGCTGATA
CGGTACAAGGGAATATTACTTTACGCCTAAAAGATGTACCTTGGGATCAGGCTTTGGATATCGTCTTAAAGACCAAAAAT
CTAGATAAGCGTCGTAATGGTAATGTGATATGGATCGCGCCAGTTTCAGAGTTGATTAAGGCTGAGGAAGAAGAGGCAAA
AGCCATTGCTCAAAGTGTAAAGCTTGCACCAATTCAATCTGAATATATCAAGCTAAGCTATGCAAAAGCAGCAGATATTT
TAAAACTGATCGAAGATTCTCGTGATGGTAAAGCTGGTATGTCCAATCGGACAGCAAACACAGATTCACTTGCTTTAGAA
AGCTTATTGAGTCCGCGAGGTAGTGCTGTCGCAGATGTGCGTACTAACACTTTGATCGTAAATGATACGGCCCAAAATAT
TGACAAGATCCGTAAGATGGTGGATCTGTTAGATGTTTCAGTTAAACAGGTGATGATCGAAGCCCGTATTGTTCGAGCGA
GTACCGATTTTACCCGAGAGATGGGAGTTAAGTGGGGAATCCTATCTCAAGGTGTTACCCGTAATAATGACCTGTTAGTT
GGTGGAAGTGACACTACGCTGTGGAATTTGAGAGAGCCGAAAAAAGATAGCGAAACTGGTGGGTGGAAATATGAAATCGA
ACGTCCCGATAATTTAAATGTAGACTTGGGGGCAACGACTGCAGGTGCAAGTCGTATTGCTTTTGGCTTAATTAGTCTCT
CTGATTTTATGTTGGATTTAGAGCTTTCAGCAGTGCAAGCTGATGGATATGGTGAGGTTATTTCAACACCAAAAGTAATG
ACAGCAGATAAGCAGCCTGCAAAAATTGAGTCAGGAACCAAAATTCCTTATTCATCTTCAACAGGTGCAGGTGCAAATGC
AGTACCTAAGACGGAGTTTATTGATGCAACATTGAGTTTGGATGTGACCCCAAGTATCACGCCAGATGGAAAAGTCATGA
TGAAGCTCAATATCACCAAGGATGCTCCAAGTAATCCAACACCAACAGGTCAGCTAACGATTAGCAAAAACTCAATTGAT
ACCAATGTTTTGGTTGATAATGGTGAAACTGTAGTGCTTGGTGGTATTTTTGAGCAGGAAAATATCAGCTCACAAATTAA
AGTGCCATTTTTAGGTGATCTTCCGTATGTGGGACGACTTTTCCGTCGTGATCTGAAAACAGACAATAAACGTGAACTGC
TTATTTTTGTGACACCGAGAATTGTTAATGACACTTTGACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(292-334)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-443)

AMIN domain (AMIN)

(37-121)

Bacterial type II and III secretion system protein (Secretin)

(544-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.724

100

0.762
  pilQ Acinetobacter baumannii strain A118

74.586

100

0.761
  comQ Acinetobacter baylyi ADP1

70.99

100

0.717
  pilQ Pseudomonas aeruginosa PAK

39.674

100

0.411
  pilQ Legionella pneumophila strain ERS1305867

39.079

94.789

0.37
  pilQ Legionella pneumophila strain Lp02

39.079

94.789

0.37