Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   SDC64_RS01525 Genome accession   NZ_CP139048
Coordinates   305758..306468 (+) Length   236 a.a.
NCBI ID   WP_320532893.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 300758..311468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS01510 (SDC64_01510) ponA 301304..303895 (-) 2592 WP_320532892.1 penicillin-binding protein PBP1a -
  SDC64_RS01515 (SDC64_01515) comM 304059..305117 (+) 1059 WP_004641327.1 pilus assembly protein PilM Machinery gene
  SDC64_RS01520 (SDC64_01520) pilN 305117..305761 (+) 645 WP_004641325.1 PilN domain-containing protein Machinery gene
  SDC64_RS01525 (SDC64_01525) pilO 305758..306468 (+) 711 WP_320532893.1 type 4a pilus biogenesis protein PilO Machinery gene
  SDC64_RS01530 (SDC64_01530) pilP 306468..306995 (+) 528 WP_320532894.1 pilus assembly protein PilP Machinery gene
  SDC64_RS01535 (SDC64_01535) pilQ 307057..309189 (+) 2133 WP_171055820.1 type IV pilus secretin PilQ family protein Machinery gene
  SDC64_RS01540 (SDC64_01540) aroK 309228..309770 (+) 543 WP_005087029.1 shikimate kinase AroK -
  SDC64_RS01545 (SDC64_01545) aroB 309791..310876 (+) 1086 WP_320532895.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26975.53 Da        Isoelectric Point: 4.8810

>NTDB_id=906937 SDC64_RS01525 WP_320532893.1 305758..306468(+) (pilO) [Acinetobacter haemolyticus strain JS-1us]
MSQDELNDLNQEGAAVKKKKMTVEQFFQQFNTLDMNNYGSWPWSVKVTCWIFILLAVAALGYFVVIQKQLQTIANAEARE
QSLLNEFREKESKLRNLQQYQTQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEKEVRQEFFIEQP
ISLEATGDYHAFGTFATGIAALPRIVTLHDFIVEAKEDTQKKSDIPVVHYTVKAKTYRYVGADDQVDSTAVSGGQR

Nucleotide


Download         Length: 711 bp        

>NTDB_id=906937 SDC64_RS01525 WP_320532893.1 305758..306468(+) (pilO) [Acinetobacter haemolyticus strain JS-1us]
ATGAGTCAAGATGAACTAAATGATCTCAATCAAGAAGGCGCAGCTGTAAAGAAAAAGAAAATGACAGTTGAGCAATTTTT
TCAGCAATTTAATACTTTAGATATGAACAACTATGGCAGTTGGCCATGGTCGGTAAAAGTGACGTGTTGGATTTTTATTT
TACTCGCTGTTGCGGCATTGGGTTATTTCGTTGTGATCCAAAAGCAGCTACAGACGATAGCTAATGCTGAAGCGCGTGAA
CAAAGTCTATTAAATGAGTTTAGAGAAAAGGAATCTAAATTACGCAACTTGCAGCAATACCAAACTCAATTGCAAGAAAT
GGAAGCGAATTTTAATCAGCAGCTTGAGCAGTTGCCAAAAGAAACTGAAATTCCGAGTTTGGTTGAGGATATAAACTTAA
CTGGGGTAAATTCGGGTCTGAAATTTAAAAATATTCGTTTAGAAAAAGAAGTTAGACAAGAGTTCTTCATTGAGCAACCA
ATTAGTCTGGAAGCAACAGGCGATTATCATGCCTTCGGTACTTTTGCGACAGGTATTGCCGCTTTGCCTCGAATCGTGAC
TTTGCATGATTTTATCGTCGAAGCGAAAGAAGATACTCAGAAAAAATCTGATATCCCTGTTGTCCATTATACGGTTAAAG
CAAAAACTTATCGTTATGTTGGGGCGGATGATCAGGTTGATAGCACTGCTGTTTCAGGGGGGCAACGCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

73.913

97.458

0.72
  comO Acinetobacter baylyi ADP1

71.429

97.881

0.699