Detailed information NTG0905889

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: SIC15_RS13470
• Genome accession: NZ_CP138917
• Coordinates: 2946191..2947411 (+)
• Length: 406 a.a.
• NCBI ID: WP_412536163.1
• Uniprot ID: -
• Organism: Marinobacter sp. MIT932201
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2941191..2952411

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SIC15_RS13450	-	2941194..2941640 (-)	447	WP_412536159.1	pilin	-
SIC15_RS13455	-	2941772..2943625 (-)	1854	WP_412536160.1	O-antigen ligase family protein	-
SIC15_RS13460	-	2943625..2944062 (-)	438	WP_412536161.1	pilin	-
SIC15_RS13465	pilB	2944473..2946188 (+)	1716	WP_412536162.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SIC15_RS13470	pilC	2946191..2947411 (+)	1221	WP_412536163.1	type II secretion system F family protein	Machinery gene
SIC15_RS13475	pilD	2947504..2948379 (+)	876	WP_412536164.1	prepilin peptidase	Machinery gene
SIC15_RS13480	coaE	2948455..2949054 (+)	600	WP_412536165.1	dephospho-CoA kinase	-
SIC15_RS13485	-	2949047..2950141 (+)	1095	WP_412536166.1	hypothetical protein	-
SIC15_RS13490	tsaA	2950195..2950938 (+)	744	WP_412536167.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44387.19 Da
• Isoelectric Point: 9.4315

>NTDB_id=905889 SIC15_RS13470 WP_412536163.1 2946191..2947411(+) (pilC) [Marinobacter sp. MIT932201]
MAEKAQKLESYVWEGKDRKGNKSKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMSIRNDISSGTSFAGSLRKHPKYFDDLYCNLVDSGEKAGALEAMLDRIATYLEKT
ENLKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFESLFKGFGAELPVFTQMVVNLSEWLQSWWFVVLLSIVGSIFLFK
EAKRRSQKFSDLVDKYVLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIDRIKNDVSSGT
QLQASMRQQDVFPVMAVQLTAIGEESGNLDEMLAKVAEHYEAVVDDMVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
MGQVVG

Nucleotide

• Length: 1221 bp

>NTDB_id=905889 SIC15_RS13470 WP_412536163.1 2946191..2947411(+) (pilC) [Marinobacter sp. MIT932201]
ATGGCAGAGAAAGCGCAGAAGCTAGAATCGTACGTTTGGGAAGGGAAAGACCGAAAGGGAAACAAGTCCAAGGGTGAATT
GACTGGCTCCAACCTGGCGCTGGTTAAGGCGCAACTTCGGAAGCAAGGCATTATTCCGGATAAGGTCAAGAAGAAGCCGA
AGCCGCTTTTCGGTGGCAGTAAGAAGATTACCCCCTTCGACATTGCCATGCTGACTCGTCAGCTTGCTACCATGATGAAG
GCCGGCGTGCCTCTGGTTCAAAGCTTTGACATTGTTGCCGATGGCCTTGAGAACAAGGGGCTTCAGGAACTGGTTATGAG
TATCCGGAATGATATTTCGTCGGGTACAAGTTTCGCAGGCTCATTGCGTAAGCATCCCAAGTACTTTGATGACTTGTACT
GCAACCTGGTTGATTCAGGTGAAAAAGCCGGTGCGCTTGAGGCCATGCTCGACAGGATCGCCACATACCTGGAAAAAACA
GAGAATCTCAAGAAAAAAGTAAAAAAAGCAATGACTTACCCAATTGCGGTAATTGTCGTTGCTATCGTGGTTACAGCGAT
CCTCTTAGTAAAAGTAGTACCTCAGTTTGAGAGTCTGTTTAAAGGCTTTGGCGCAGAGCTCCCGGTGTTCACCCAGATGG
TTGTTAATCTATCGGAATGGCTCCAAAGCTGGTGGTTTGTTGTGTTACTGAGCATTGTCGGGTCGATTTTTCTGTTTAAA
GAAGCCAAACGACGTTCTCAAAAGTTTTCGGATTTGGTGGATAAGTACGTCCTTAAGTTACCTGTTGTGGGAGAAATACT
CGATAAATCAGCAGTCGCAAAGTTTGGCCGGGTTCTTTCTACCACCTTTGCCGCAGGTGTTCCGCTTGTCGACGCCCTTG
ATTCTGTAGCTGGCGCAACAGGTAATGCGGTTTACAGAGACGCTATCGACCGCATCAAGAACGACGTTTCAAGCGGCACC
CAATTACAGGCCTCTATGCGCCAGCAGGATGTATTCCCCGTCATGGCTGTTCAGCTGACGGCGATTGGCGAAGAATCCGG
TAACCTCGATGAAATGCTGGCCAAAGTGGCGGAACACTACGAGGCAGTGGTCGACGACATGGTCGATAACCTGACAGCTC
TCATGGAGCCAATGATTATGGCCGTTCTGGGTGTGCTGGTTGGCGGTTTGATCATTGCCATGTACCTGCCGATCTTCCAG
ATGGGTCAGGTTGTTGGCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (277-397)

• Type II secretion system (T2SS), protein F (T2SSF) (72-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	67.654	99.754	0.675
pilC	Acinetobacter baylyi ADP1	58.621	100	0.586
pilC	Acinetobacter baumannii D1279779	58.519	99.754	0.584
pilC	Legionella pneumophila strain ERS1305867	53.448	100	0.534
pilG	Neisseria gonorrhoeae MS11	43.457	99.754	0.433
pilG	Neisseria meningitidis 44/76-A	43.103	100	0.431
pilC	Vibrio campbellii strain DS40M4	40.295	100	0.404
pilC	Vibrio cholerae strain A1552	40.148	100	0.401