Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SIC19_RS16320 Genome accession   NZ_CP138916
Coordinates   3580490..3581710 (-) Length   406 a.a.
NCBI ID   WP_278367186.1    Uniprot ID   -
Organism   Marinobacter sp. MIT930201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3575490..3586710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC19_RS16295 yacG 3575573..3575761 (-) 189 WP_036209919.1 DNA gyrase inhibitor YacG -
  SIC19_RS16300 - 3575782..3578142 (-) 2361 WP_412535539.1 response regulator -
  SIC19_RS16305 tsaA 3578175..3578921 (-) 747 WP_278367192.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  SIC19_RS16310 coaE 3578927..3579529 (-) 603 WP_278367190.1 dephospho-CoA kinase -
  SIC19_RS16315 pilD 3579530..3580405 (-) 876 WP_278367188.1 prepilin peptidase Machinery gene
  SIC19_RS16320 pilC 3580490..3581710 (-) 1221 WP_278367186.1 type II secretion system F family protein Machinery gene
  SIC19_RS16325 - 3581713..3582204 (-) 492 Protein_3218 ATPase, T2SS/T4P/T4SS family -
  SIC19_RS16330 - 3582203..3583021 (+) 819 WP_412535540.1 O-antigen ligase family protein -
  SIC19_RS16335 - 3583052..3583495 (+) 444 WP_075196486.1 pilin -
  SIC19_RS16340 cysQ 3583777..3584544 (+) 768 WP_278367181.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  SIC19_RS16345 rfaH 3584541..3585032 (+) 492 WP_278367180.1 transcription/translation regulatory transformer protein RfaH -
  SIC19_RS16350 - 3585238..3585906 (+) 669 WP_412535541.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44381.23 Da        Isoelectric Point: 9.6154

>NTDB_id=905864 SIC19_RS16320 WP_278367186.1 3580490..3581710(-) (pilC) [Marinobacter sp. MIT930201]
MAEKAEKLQAFVWEGKDRKGNKTKGEVSGTNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENRGLQELVTNIRNDISSGTSFAGALRKYPRHFDDLYCNLVDSGEKAGALESMLDRIATYLEKT
EILKKKVKKAMTYPAAIVVVAIVVTAILLVKVVPQFESLFKGFGADLPVFTQMVVRLSEWLQTWWFVVLLGIVGTIFLFK
EAVRRSQKFSDLVDKYVLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIQRIKNDVSSGT
QLQATMRQQDVFPVMAVQLTAIGEESGNLDEMLEKVAVHYEAVVDDMVDNLTALLEPIIMAVLGVLVGGLIIAMYLPIFQ
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=905864 SIC19_RS16320 WP_278367186.1 3580490..3581710(-) (pilC) [Marinobacter sp. MIT930201]
ATGGCAGAGAAAGCAGAGAAACTTCAGGCGTTCGTCTGGGAAGGCAAAGACCGCAAGGGCAACAAAACCAAGGGCGAGGT
GTCTGGCACCAACCTGGCTCTGGTGAAGGCCCAGTTGCGTAAGCAGGGCATTATTCCAGACAAGGTGAAGAAGAAACCAA
AACCCCTGTTTGGCGGCAGCAAAAAGATCACGCCTTTCGACATCGCCATGCTTACTCGCCAGCTCGCCACCATGATGAAG
GCTGGTGTTCCGCTGGTTCAGAGTTTCGATATTGTGGCTGACGGCCTTGAGAACAGGGGCCTTCAAGAGCTGGTTACCAA
CATCCGCAACGATATTTCCTCGGGCACCAGTTTCGCCGGCGCCCTGCGGAAGTATCCCAGGCATTTTGACGACCTGTACT
GCAACCTGGTGGATTCCGGCGAAAAGGCCGGTGCACTGGAAAGCATGCTGGACCGCATCGCCACATATCTTGAGAAAACT
GAAATTCTTAAGAAAAAAGTAAAGAAAGCGATGACCTACCCTGCTGCTATTGTTGTGGTCGCTATCGTCGTAACGGCCAT
CCTGCTGGTAAAAGTGGTACCCCAGTTCGAAAGCCTGTTTAAGGGCTTTGGTGCAGACCTGCCAGTATTTACACAGATGG
TGGTCCGGTTGTCGGAATGGCTTCAGACTTGGTGGTTTGTGGTTTTGCTCGGCATTGTCGGCACTATCTTTCTGTTCAAG
GAAGCTGTAAGACGATCTCAGAAATTCTCGGATCTCGTCGATAAATATGTGCTGAAACTGCCTGTCGTGGGCGAAATCCT
GGATAAGTCGGCCGTTGCCAAGTTTGGGCGCGTACTTTCCACGACCTTTGCGGCTGGTGTTCCGCTCGTTGATGCGCTCG
ACTCCGTTGCCGGCGCGACCGGCAACGCCGTTTATCGGGATGCTATCCAGCGAATAAAAAACGATGTTTCGAGCGGTACC
CAATTACAGGCCACCATGCGCCAACAGGATGTGTTCCCGGTTATGGCCGTGCAATTGACTGCCATTGGTGAAGAATCCGG
TAACCTGGATGAAATGCTGGAGAAAGTCGCCGTCCATTACGAAGCGGTGGTGGATGACATGGTCGACAACCTCACAGCCC
TGCTGGAGCCGATCATCATGGCGGTACTGGGCGTACTCGTAGGCGGCTTGATCATCGCTATGTACCTGCCGATCTTCCAG
ATGGGTCAGGTGGTTGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.42

99.754

0.663
  pilC Acinetobacter baumannii D1279779

58.272

99.754

0.581
  pilC Acinetobacter baylyi ADP1

58.128

100

0.581
  pilC Legionella pneumophila strain ERS1305867

52.709

100

0.527
  pilG Neisseria gonorrhoeae MS11

42.222

99.754

0.421
  pilG Neisseria meningitidis 44/76-A

41.872

100

0.419
  pilC Vibrio campbellii strain DS40M4

40.786

100

0.409
  pilC Vibrio cholerae strain A1552

40.75

98.522

0.401