Detailed information NTG0905863

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SIC19_RS16315
• Genome accession: NZ_CP138916
• Coordinates: 3579530..3580405 (-)
• Length: 291 a.a.
• NCBI ID: WP_278367188.1
• Uniprot ID: -
• Organism: Marinobacter sp. MIT930201
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3574530..3585405

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SIC19_RS16290	-	3574917..3575471 (-)	555	WP_075196493.1	YfaZ family outer membrane protein	-
SIC19_RS16295	yacG	3575573..3575761 (-)	189	WP_036209919.1	DNA gyrase inhibitor YacG	-
SIC19_RS16300	-	3575782..3578142 (-)	2361	WP_412535539.1	response regulator	-
SIC19_RS16305	tsaA	3578175..3578921 (-)	747	WP_278367192.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
SIC19_RS16310	coaE	3578927..3579529 (-)	603	WP_278367190.1	dephospho-CoA kinase	-
SIC19_RS16315	pilD	3579530..3580405 (-)	876	WP_278367188.1	prepilin peptidase	Machinery gene
SIC19_RS16320	pilC	3580490..3581710 (-)	1221	WP_278367186.1	type II secretion system F family protein	Machinery gene
SIC19_RS16325	-	3581713..3582204 (-)	492	Protein_3218	ATPase, T2SS/T4P/T4SS family	-
SIC19_RS16330	-	3582203..3583021 (+)	819	WP_412535540.1	O-antigen ligase family protein	-
SIC19_RS16335	-	3583052..3583495 (+)	444	WP_075196486.1	pilin	-
SIC19_RS16340	cysQ	3583777..3584544 (+)	768	WP_278367181.1	3'(2'),5'-bisphosphate nucleotidase CysQ	-
SIC19_RS16345	rfaH	3584541..3585032 (+)	492	WP_278367180.1	transcription/translation regulatory transformer protein RfaH	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32022.01 Da
• Isoelectric Point: 4.9790

>NTDB_id=905863 SIC19_RS16315 WP_278367188.1 3579530..3580405(-) (pilD) [Marinobacter sp. MIT930201]
MISVDTFLATPWLLYTAVIFFSLCIGSFLNVVILRLPKMMQQDWRCQCEEFLELSDDQRKNDEPITLSKPASTCPSCGHG
IRAWENVPVISYLVLGGKCASCKAGISPRYPIIEAITALFSVVTILVMGPSEAALWSLLLVWVLIALTVIDFDTQLLPDS
MTLPLMWLGLILNYFGVLTDFSSAFWGAVAGYLSLWSVYWLFKLVTGKEGMGHGDFKLLAALGAWLGWELLPAVILLSSL
VGAVVGISLMVFRKHGREVPIPFGPYLAAAGLLCLWFGAEIQAAWFTYLGV

Nucleotide

• Length: 876 bp

>NTDB_id=905863 SIC19_RS16315 WP_278367188.1 3579530..3580405(-) (pilD) [Marinobacter sp. MIT930201]
ATGATTTCCGTTGATACGTTCCTGGCCACGCCCTGGCTTCTCTATACCGCAGTCATTTTCTTCTCCCTCTGCATCGGTAG
CTTCCTGAATGTGGTGATCCTTCGCCTGCCGAAGATGATGCAGCAGGACTGGCGCTGCCAATGCGAAGAGTTCCTGGAGC
TATCAGACGATCAACGCAAGAACGATGAGCCGATTACGCTCTCCAAACCTGCCTCCACCTGCCCTTCCTGCGGTCACGGG
ATTCGCGCCTGGGAAAACGTCCCGGTCATCAGCTACCTGGTTTTGGGCGGCAAATGCGCATCATGCAAAGCGGGCATTTC
ACCGCGATACCCAATCATTGAGGCAATTACCGCGCTGTTTTCGGTGGTGACCATTCTGGTCATGGGGCCGTCTGAGGCTG
CACTATGGTCGCTGTTGCTGGTTTGGGTGCTGATCGCGCTGACGGTGATCGATTTCGACACCCAGTTGTTGCCAGACAGC
ATGACGCTGCCCCTCATGTGGCTGGGGCTAATCCTGAATTACTTCGGCGTGCTGACGGATTTCAGCAGTGCCTTCTGGGG
CGCGGTGGCAGGCTATCTGTCGCTGTGGTCGGTGTACTGGCTGTTCAAGTTGGTAACCGGCAAGGAGGGCATGGGCCACG
GCGATTTCAAGTTATTGGCGGCGCTGGGCGCCTGGCTGGGCTGGGAATTGCTGCCGGCGGTGATTTTGTTGTCGTCTTTG
GTCGGTGCCGTTGTGGGGATTAGTTTGATGGTGTTCCGCAAGCACGGCCGCGAAGTGCCAATTCCGTTCGGGCCCTATTT
GGCGGCGGCGGGTTTGCTCTGCCTTTGGTTTGGGGCAGAAATTCAGGCAGCCTGGTTTACCTATCTGGGGGTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	55.235	95.189	0.526
pilD	Acinetobacter nosocomialis M2	54.874	95.189	0.522
pilD	Vibrio campbellii strain DS40M4	51.399	98.282	0.505
pilD	Vibrio cholerae strain A1552	50.699	98.282	0.498
pilD	Neisseria gonorrhoeae MS11	51.394	86.254	0.443