Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   SBP12_RS18115 Genome accession   NZ_CP138634
Coordinates   3656080..3657225 (+) Length   381 a.a.
NCBI ID   WP_033574379.1    Uniprot ID   -
Organism   Bacillus velezensis strain A5     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3651080..3662225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBP12_RS18095 (SBP12_18095) - 3651977..3652405 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  SBP12_RS18100 (SBP12_18100) - 3652559..3653071 (+) 513 Protein_3507 bacteriocin biosynthesis protein AlbG -
  SBP12_RS18105 (SBP12_18105) - 3653078..3654454 (-) 1377 WP_039063793.1 YncE family protein -
  SBP12_RS18110 (SBP12_18110) - 3654494..3655849 (-) 1356 WP_039253463.1 YncE family protein -
  SBP12_RS18115 (SBP12_18115) rapF 3656080..3657225 (+) 1146 WP_033574379.1 tetratricopeptide repeat protein Regulator
  SBP12_RS18120 (SBP12_18120) phrF 3657209..3657328 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  SBP12_RS18125 (SBP12_18125) - 3657525..3657728 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  SBP12_RS18130 (SBP12_18130) - 3657742..3657945 (+) 204 WP_007407641.1 hypothetical protein -
  SBP12_RS18135 (SBP12_18135) - 3657980..3658165 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  SBP12_RS18140 (SBP12_18140) - 3658351..3658632 (+) 282 WP_007407643.1 hypothetical protein -
  SBP12_RS18145 (SBP12_18145) - 3658676..3659188 (+) 513 WP_039253458.1 stage II sporulation protein M -
  SBP12_RS18150 (SBP12_18150) - 3659779..3659997 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  SBP12_RS18155 (SBP12_18155) speB 3660165..3661037 (-) 873 WP_007407646.1 agmatinase -
  SBP12_RS18160 (SBP12_18160) speE 3661096..3661926 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45571.63 Da        Isoelectric Point: 4.5769

>NTDB_id=903882 SBP12_RS18115 WP_033574379.1 3656080..3657225(+) (rapF) [Bacillus velezensis strain A5]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=903882 SBP12_RS18115 WP_033574379.1 3656080..3657225(+) (rapF) [Bacillus velezensis strain A5]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCATAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCTAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATTATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AAGCAGAAGATTCCCTATATATCGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567