Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ABI424_RS03170 Genome accession   NZ_CP157211
Coordinates   726840..727421 (+) Length   193 a.a.
NCBI ID   WP_012341086.1    Uniprot ID   B0UW20
Organism   Histophilus somni strain 23-038383_S91     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 721840..732421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI424_RS03155 (ABI424_000632) - 722389..723648 (+) 1260 WP_012341088.1 HlyC/CorC family transporter -
  ABI424_RS03160 (ABI424_000633) pilB 723682..725073 (-) 1392 WP_136122165.1 GspE/PulE family protein Machinery gene
  ABI424_RS03165 (ABI424_000634) tig 725456..726754 (+) 1299 WP_011609585.1 trigger factor -
  ABI424_RS03170 (ABI424_000635) clpP 726840..727421 (+) 582 WP_012341086.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ABI424_RS03175 (ABI424_000636) clpX 727437..728681 (+) 1245 WP_012341085.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  ABI424_RS03180 (ABI424_000637) ilvD 729079..730914 (-) 1836 WP_012341084.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21396.66 Da        Isoelectric Point: 6.1020

>NTDB_id=902901 ABI424_RS03170 WP_012341086.1 726840..727421(+) (clpP) [Histophilus somni strain 23-038383_S91]
MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLTGEVEDRMANLIVAQLLFLEAEDPAKDINIYINSPGGSVTAGMAIYDT
MQFIKPNVRTLCIGQACSMGAFLLAGGTAGKRAALPHARVMIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQ
SIEQIEQDTDRDNFMSAEQAKLYGLVDDVLIKR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=902901 ABI424_RS03170 WP_012341086.1 726840..727421(+) (clpP) [Histophilus somni strain 23-038383_S91]
ATGAGCGTCATTCCTATGGTCGTAGAACAAACATCAAGAGGCGAACGATCTTATGATATTTATTCACGTCTATTAAAAGA
GCGGGTGATTTTTCTGACTGGAGAAGTTGAAGATCGTATGGCAAACTTGATTGTTGCTCAACTTCTCTTTTTGGAAGCGG
AAGATCCAGCAAAAGACATTAATATTTATATAAACTCTCCCGGCGGTTCAGTCACTGCCGGAATGGCAATTTATGATACT
ATGCAATTTATTAAGCCTAATGTGAGAACTCTTTGTATTGGACAAGCATGTTCAATGGGAGCATTTTTATTGGCGGGTGG
CACAGCAGGTAAAAGGGCGGCATTGCCTCATGCAAGAGTGATGATTCATCAGCCTTTAGGTGGCTTTAGAGGACAAGCCT
CTGATATTCAAATTCATGCACAAGAAATTTTAAAAATTAAGCAGACGTTAAATGAACGTTTAGCATTTCATACAGGACAA
TCTATTGAACAAATTGAACAAGATACTGATCGTGATAATTTTATGTCTGCAGAACAGGCAAAATTGTACGGTTTAGTTGA
TGACGTGTTAATTAAACGGTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UW20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

66.316

98.446

0.653
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.138

97.927

0.648
  clpP Streptococcus pneumoniae D39

54.737

98.446

0.539
  clpP Streptococcus pneumoniae R6

54.737

98.446

0.539
  clpP Streptococcus pneumoniae TIGR4

54.737

98.446

0.539
  clpP Streptococcus thermophilus LMD-9

54.737

98.446

0.539
  clpP Streptococcus pyogenes JRS4

54.737

98.446

0.539
  clpP Streptococcus pyogenes MGAS315

54.737

98.446

0.539
  clpP Streptococcus thermophilus LMG 18311

54.737

98.446

0.539
  clpP Streptococcus pneumoniae Rx1

54.737

98.446

0.539
  clpP Streptococcus mutans UA159

54.45

98.964

0.539
  clpP Lactococcus lactis subsp. cremoris KW2

53.158

98.446

0.523
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.105

98.446

0.513