Detailed information NTG0902902

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: ABI424_RS03175
• Genome accession: NZ_CP157211
• Coordinates: 727437..728681 (+)
• Length: 414 a.a.
• NCBI ID: WP_012341085.1
• Uniprot ID: B0UW19
• Organism: Histophilus somni strain 23-038383_S91
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 722437..733681

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABI424_RS03160 (ABI424_000633)	pilB	723682..725073 (-)	1392	WP_136122165.1	GspE/PulE family protein	Machinery gene
ABI424_RS03165 (ABI424_000634)	tig	725456..726754 (+)	1299	WP_011609585.1	trigger factor	-
ABI424_RS03170 (ABI424_000635)	clpP	726840..727421 (+)	582	WP_012341086.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
ABI424_RS03175 (ABI424_000636)	clpX	727437..728681 (+)	1245	WP_012341085.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
ABI424_RS03180 (ABI424_000637)	ilvD	729079..730914 (-)	1836	WP_012341084.1	dihydroxy-acid dehydratase	-
ABI424_RS03185 (ABI424_000638)	-	731087..732637 (-)	1551	WP_012341083.1	exopolyphosphatase	-

Sequence

Protein

• Length: 414 a.a.
• Molecular weight: 46069.83 Da
• Isoelectric Point: 4.5662

>NTDB_id=902902 ABI424_RS03175 WP_012341085.1 727437..728681(+) (clpX) [Histophilus somni strain 23-038383_S91]
MTKEKELHCSFCGKEQKEVDKLIAGTSGYICNECIELCHDMLANADDIEEIDEEFQEEEPKLPTPHEIRAHLDDYVIGQD
YAKKVLAVAVYNHYKRLRSEKNTSEVELGKSNILLIGPTGSGKTLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCDYDIEKAQQGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASIPPQGGRKHPQQEMLRVDTSK
ILFICGGAFAGLDKIIEKRTNTSGKGIGFGADVRIDEEKVSLTELFKQVEPDDLMKFGLIPEFIGRLPVIAPLSELDEEA
LVKILTEPKNALTKQYQVLFSLENIELEFTQEALIAMAKKALARKTGARGLRSIVETLLLDTMYDLPSIENLQKVIVEEE
TVTENKVPVLKFNS

Nucleotide

• Length: 1245 bp

>NTDB_id=902902 ABI424_RS03175 WP_012341085.1 727437..728681(+) (clpX) [Histophilus somni strain 23-038383_S91]
ATGACAAAAGAAAAAGAATTACATTGCTCTTTTTGTGGTAAGGAACAAAAAGAAGTAGATAAATTAATTGCAGGCACATC
CGGTTATATTTGTAATGAGTGTATTGAATTATGTCATGACATGTTAGCTAATGCGGATGACATCGAAGAAATTGATGAAG
AATTTCAAGAGGAAGAGCCTAAATTACCGACACCACATGAAATTCGTGCACATTTAGATGATTATGTCATAGGCCAAGAT
TATGCTAAAAAAGTATTAGCTGTGGCGGTGTATAATCATTATAAACGTTTACGTAGCGAAAAAAATACTTCTGAGGTTGA
ATTGGGCAAAAGTAATATTTTGCTTATCGGCCCGACAGGCAGTGGCAAGACTTTATTGGCACAAACGTTAGCTCGTATGC
TCAATGTTCCCTTTGCAATGGCAGATGCAACAACTTTAACTGAAGCGGGATATGTTGGTGAAGATGTTGAAAATGTCTTG
CAAAAATTATTACAAAATTGTGATTATGATATAGAGAAAGCTCAACAAGGTATTATCTATATTGATGAAATTGATAAGAT
TACACGTAAGTCTGAAAATCCTTCTATTACTCGTGATGTATCAGGCGAAGGTGTGCAGCAGGCTTTACTAAAATTAGTTG
AAGGAACGGTAGCTTCTATTCCTCCACAAGGCGGACGAAAGCATCCTCAACAAGAAATGTTGCGTGTGGACACCTCTAAG
ATTTTATTTATTTGTGGCGGTGCTTTTGCCGGTTTAGATAAAATTATTGAGAAAAGAACGAATACCAGTGGCAAAGGTAT
TGGTTTTGGTGCTGATGTTCGTATTGATGAAGAGAAAGTCAGTTTAACCGAATTATTTAAGCAAGTTGAACCTGATGATT
TAATGAAATTTGGCTTAATACCGGAGTTTATCGGTCGTTTACCTGTTATCGCACCTTTAAGCGAACTGGATGAGGAGGCT
TTGGTAAAAATTTTAACTGAGCCGAAAAATGCCCTAACTAAGCAATATCAAGTTTTATTCAGCTTAGAAAATATTGAATT
AGAATTTACCCAAGAAGCATTGATTGCAATGGCGAAAAAAGCACTAGCTCGTAAAACAGGTGCCAGAGGTTTGCGATCTA
TTGTTGAAACCCTATTGCTTGATACTATGTATGATCTCCCTTCTATTGAAAACTTACAGAAAGTTATAGTGGAAGAAGAA
ACAGTCACCGAAAATAAAGTGCCAGTATTGAAGTTCAATAGTTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (7-43)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (316-393)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-310)

3D structure

• AlphaFold DB: B0UW19

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	58.894	100	0.592
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.074	97.826	0.529