Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SAY89_RS12990 Genome accession   NZ_CP138348
Coordinates   3054806..3055171 (-) Length   121 a.a.
NCBI ID   WP_015220734.1    Uniprot ID   A0AAF0ZCG7
Organism   Cyanobacterium aponinum AL20115     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3049806..3060171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAY89_RS12975 (SAY89_12975) - 3050325..3051089 (-) 765 WP_099435893.1 MlaE family lipid ABC transporter permease subunit -
  SAY89_RS12980 (SAY89_12980) pilJ 3051197..3053956 (-) 2760 WP_320001171.1 methyl-accepting chemotaxis protein Machinery gene
  SAY89_RS12985 (SAY89_12985) - 3054022..3054558 (-) 537 WP_015220733.1 chemotaxis protein CheW -
  SAY89_RS12990 (SAY89_12990) pilH 3054806..3055171 (-) 366 WP_015220734.1 response regulator transcription factor Machinery gene
  SAY89_RS12995 (SAY89_12995) hpnH 3055395..3056408 (-) 1014 WP_155084337.1 adenosyl-hopene transferase HpnH -
  SAY89_RS13000 (SAY89_13000) murA 3056492..3057796 (-) 1305 WP_406584792.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SAY89_RS13005 (SAY89_13005) ruvX 3058504..3058935 (-) 432 WP_015220737.1 Holliday junction resolvase RuvX -
  SAY89_RS13010 (SAY89_13010) pgsA 3058977..3059516 (-) 540 WP_015220738.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13740.16 Da        Isoelectric Point: 7.7809

>NTDB_id=902061 SAY89_RS12990 WP_015220734.1 3054806..3055171(-) (pilH) [Cyanobacterium aponinum AL20115]
MSTVLLVEDSIPTRKMISELLTKQGFNVEVATDGIQALEVLPNLRPDLVILDIIMPKMNGYEVCRKIKSDPQTKDLPVII
CSSKGEDFDRYWGIKQGADAYIAKPFREKELIATIKQFLKR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=902061 SAY89_RS12990 WP_015220734.1 3054806..3055171(-) (pilH) [Cyanobacterium aponinum AL20115]
ATGAGTACAGTGTTACTTGTCGAAGATAGTATTCCGACAAGAAAAATGATTTCTGAACTATTAACCAAACAAGGTTTTAA
CGTAGAGGTAGCTACTGATGGAATTCAAGCCTTAGAAGTATTACCTAATCTTCGCCCCGACTTGGTTATATTGGATATTA
TCATGCCTAAAATGAATGGTTACGAAGTATGTCGTAAAATAAAATCTGATCCCCAAACCAAAGATTTACCTGTCATAATT
TGTTCATCAAAAGGAGAAGACTTCGATCGCTATTGGGGTATCAAACAAGGGGCGGATGCCTACATAGCCAAACCTTTCAG
AGAAAAAGAATTAATTGCTACTATTAAACAATTTTTAAAAAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

65.833

99.174

0.653
  scnR Streptococcus mutans UA159

39.344

100

0.397
  pilL-C Synechocystis sp. PCC 6803

38.655

98.347

0.38
  micA Streptococcus pneumoniae Cp1015

37.19

100

0.372
  vicR Streptococcus mutans UA159

36.364

100

0.364
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364
  chiS Vibrio cholerae strain A1552

38.938

93.388

0.364