Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   R9X41_RS22495 Genome accession   NZ_CP137854
Coordinates   4869351..4869779 (-) Length   142 a.a.
NCBI ID   WP_318632652.1    Uniprot ID   -
Organism   Xylophilus sp. GOD-11R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4864351..4874779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9X41_RS22475 (R9X41_22475) moaC 4864866..4865369 (+) 504 WP_318632649.1 cyclic pyranopterin monophosphate synthase MoaC -
  R9X41_RS22480 (R9X41_22480) - 4865409..4866044 (-) 636 WP_318635309.1 class I SAM-dependent methyltransferase -
  R9X41_RS22485 (R9X41_22485) - 4866047..4868962 (-) 2916 WP_318632650.1 hypothetical protein -
  R9X41_RS22490 (R9X41_22490) - 4868981..4869301 (-) 321 WP_318632651.1 hypothetical protein -
  R9X41_RS22495 (R9X41_22495) pilA 4869351..4869779 (-) 429 WP_318632652.1 pilin Machinery gene
  R9X41_RS22500 (R9X41_22500) - 4869853..4870287 (-) 435 WP_412556639.1 pilin -
  R9X41_RS22505 (R9X41_22505) - 4870450..4871241 (-) 792 WP_318632653.1 3',5'-cyclic-nucleotide phosphodiesterase -
  R9X41_RS22510 (R9X41_22510) - 4871285..4873543 (-) 2259 WP_318632654.1 adenylate/guanylate cyclase domain-containing protein -
  R9X41_RS22515 (R9X41_22515) - 4873595..4874278 (-) 684 WP_318632655.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14054.35 Da        Isoelectric Point: 8.8677

>NTDB_id=900923 R9X41_RS22495 WP_318632652.1 4869351..4869779(-) (pilA) [Xylophilus sp. GOD-11R]
MKRLQRGFTLIELMIVVAIIGLLAAVALPAYQDYTVRARVTELLGVAGAARTCIAEAYHAAGGGATVPTSITTGCAIVPV
GGVSAASVGTGGLVTVVGSTATSSVGQAVTVTLTPAVQSSVGMITWSCSGSPAKYVPGSCRN

Nucleotide


Download         Length: 429 bp        

>NTDB_id=900923 R9X41_RS22495 WP_318632652.1 4869351..4869779(-) (pilA) [Xylophilus sp. GOD-11R]
ATGAAACGACTGCAGCGAGGCTTTACGCTTATCGAATTAATGATCGTAGTTGCGATCATCGGGTTGCTCGCTGCGGTCGC
CCTTCCGGCATACCAGGACTACACGGTCAGGGCGCGGGTAACGGAGCTTCTTGGCGTGGCAGGTGCGGCGCGCACCTGCA
TCGCCGAGGCCTACCACGCTGCCGGAGGCGGGGCGACCGTTCCCACCTCTATCACCACAGGCTGCGCAATCGTCCCAGTG
GGGGGCGTCAGTGCTGCATCCGTCGGCACAGGTGGACTTGTCACCGTAGTCGGTTCAACCGCTACCAGCTCTGTCGGACA
AGCGGTCACGGTGACTTTGACTCCAGCCGTTCAGTCAAGCGTTGGGATGATCACTTGGAGCTGTTCGGGGTCTCCTGCGA
AATACGTTCCAGGTTCCTGTCGAAACTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)

Pilin (bacterial filament) (Pilin)

(36-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

40.588

100

0.486
  comP Acinetobacter baylyi ADP1

44.667

100

0.472
  pilA2 Legionella pneumophila strain ERS1305867

46.809

99.296

0.465
  pilA2 Legionella pneumophila str. Paris

46.809

99.296

0.465
  pilA/pilA1 Eikenella corrodens VA1

38.312

100

0.415
  pilE Neisseria gonorrhoeae strain FA1090

35.802

100

0.408
  pilE Neisseria gonorrhoeae MS11

33.129

100

0.38
  pilA/pilAI Pseudomonas stutzeri DSM 10701

36.986

100

0.38