Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LDP65_RS16335 Genome accession   NZ_AP025152
Coordinates   3618598..3619830 (+) Length   410 a.a.
NCBI ID   WP_126606907.1    Uniprot ID   A0AAV5NT12
Organism   Vibrio penaeicida strain TUMSAT-OK1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3613598..3624830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDP65_RS16315 ampD 3614251..3614808 (-) 558 WP_126606913.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LDP65_RS16320 nadC 3615292..3616179 (+) 888 WP_126606912.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LDP65_RS16325 - 3616474..3616896 (+) 423 WP_126606910.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LDP65_RS16330 pilB 3616900..3618588 (+) 1689 WP_126606908.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LDP65_RS16335 pilC 3618598..3619830 (+) 1233 WP_126606907.1 type II secretion system F family protein Machinery gene
  LDP65_RS16340 pilD 3619890..3620759 (+) 870 WP_126606905.1 A24 family peptidase Machinery gene
  LDP65_RS16345 coaE 3620811..3621410 (+) 600 WP_126606903.1 dephospho-CoA kinase -
  LDP65_RS16350 zapD 3621448..3622188 (+) 741 WP_126606901.1 cell division protein ZapD -
  LDP65_RS16355 yacG 3622258..3622452 (+) 195 WP_126606900.1 DNA gyrase inhibitor YacG -
  LDP65_RS16360 mutT 3622544..3622957 (-) 414 WP_126606898.1 8-oxo-dGTP diphosphatase MutT -
  LDP65_RS16365 rplS 3623115..3623468 (-) 354 WP_101112478.1 50S ribosomal protein L19 -
  LDP65_RS16370 trmD 3623510..3624253 (-) 744 WP_126606897.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45898.07 Da        Isoelectric Point: 10.3776

>NTDB_id=90088 LDP65_RS16335 WP_126606907.1 3618598..3619830(+) (pilC) [Vibrio penaeicida strain TUMSAT-OK1]
MDRSITPRLKLYNFRWKGINSSGKKVSGQFLAYTEVEVRDKLRNQQVQIKKVRKSGISLLDKLSHKVKKKDIMVFTRQMA
TMLGTGVPIVQSLRMVSDNHNKAEMKSILSQVTKSVEAGTPISKALSTSNSLFDSFYTDLIETGEQTGNLSDVFERIATY
QEKSEQLRSKVIKAMIYPVMVLLTAIGVSVLMLKFVIPEFETMFSGFGAELPWFTQQVLKLSHIVQNDLWKMVVAITVLG
IAFKLIRKRSFKFRLRSSRWGLKFPIIGSVFSKAAIAKFSRTLATSFNAGIPILNGLKTSSKTASNLHYQVAIEQVYKDT
AAGMPIYIAMRNTEAFPEMVLQMVMIGEETGSLDDMLNKVANVYEFEVDNTVDNLGKLLEPLIIIFLGVVIGGLVVSMYL
PVFNLMSVLG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=90088 LDP65_RS16335 WP_126606907.1 3618598..3619830(+) (pilC) [Vibrio penaeicida strain TUMSAT-OK1]
TTGGATCGTTCAATTACCCCTCGCCTCAAACTGTACAACTTTCGCTGGAAAGGCATTAACAGCTCTGGGAAAAAAGTCTC
TGGGCAATTTCTGGCGTACACCGAGGTTGAAGTACGCGATAAGCTGCGAAACCAACAAGTTCAAATTAAAAAAGTCAGGA
AATCGGGTATCTCGTTGCTCGATAAGCTGAGCCACAAAGTTAAAAAGAAAGACATCATGGTGTTCACTCGCCAAATGGCA
ACCATGCTGGGAACTGGTGTCCCCATCGTTCAATCGTTAAGAATGGTGTCGGATAATCACAACAAAGCAGAGATGAAATC
CATCCTGTCTCAGGTAACCAAATCCGTAGAGGCTGGCACTCCTATCTCTAAAGCACTTAGCACATCCAATAGCCTGTTTG
ACAGCTTTTACACCGACTTGATTGAAACTGGTGAGCAGACTGGTAATTTATCCGATGTTTTTGAGCGTATCGCTACCTAT
CAAGAAAAAAGCGAGCAGCTCCGCTCTAAAGTCATTAAAGCGATGATCTACCCTGTCATGGTTCTTTTGACTGCAATTGG
AGTGTCTGTTCTGATGCTCAAGTTCGTCATACCCGAGTTTGAGACGATGTTTTCGGGGTTTGGCGCTGAATTACCATGGT
TTACTCAACAAGTGCTAAAACTCTCGCACATAGTGCAAAACGACTTGTGGAAGATGGTGGTCGCTATCACCGTACTGGGC
ATTGCTTTTAAACTCATCAGAAAACGATCGTTTAAATTTCGCTTAAGAAGCTCCAGGTGGGGACTGAAATTCCCAATCAT
CGGAAGCGTTTTTAGTAAAGCAGCCATCGCCAAGTTCAGCCGAACACTGGCCACCAGCTTTAATGCTGGTATCCCTATTC
TTAACGGGCTCAAAACCAGCTCTAAGACCGCCAGCAATTTGCATTACCAAGTCGCGATAGAACAGGTTTATAAAGATACA
GCAGCAGGTATGCCTATTTATATCGCCATGAGAAACACGGAAGCTTTTCCAGAAATGGTCTTGCAAATGGTCATGATTGG
AGAAGAAACAGGTTCACTCGACGACATGCTGAATAAAGTCGCGAACGTCTACGAGTTTGAAGTTGATAACACCGTTGATA
ACCTCGGAAAATTACTCGAACCCCTCATTATCATCTTTCTTGGTGTTGTAATTGGTGGGTTAGTCGTCTCTATGTACTTG
CCAGTGTTTAACTTAATGAGTGTATTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

70.936

99.024

0.702
  pilC Vibrio campbellii strain DS40M4

67.317

100

0.673
  pilC Acinetobacter baumannii D1279779

40.955

97.073

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.955

97.073

0.398
  pilC Acinetobacter baylyi ADP1

40.704

97.073

0.395
  pilG Neisseria gonorrhoeae MS11

39.401

97.805

0.385
  pilG Neisseria meningitidis 44/76-A

39.401

97.805

0.385
  pilC Legionella pneumophila strain ERS1305867

37.897

99.756

0.378

Multiple sequence alignment