Detailed information NTG0090089

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LDP65_RS16340
• Genome accession: NZ_AP025152
• Coordinates: 3619890..3620759 (+)
• Length: 289 a.a.
• NCBI ID: WP_126606905.1
• Uniprot ID: -
• Organism: Vibrio penaeicida strain TUMSAT-OK1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3614890..3625759

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDP65_RS16320	nadC	3615292..3616179 (+)	888	WP_126606912.1	carboxylating nicotinate-nucleotide diphosphorylase	-
LDP65_RS16325	-	3616474..3616896 (+)	423	WP_126606910.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
LDP65_RS16330	pilB	3616900..3618588 (+)	1689	WP_126606908.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LDP65_RS16335	pilC	3618598..3619830 (+)	1233	WP_126606907.1	type II secretion system F family protein	Machinery gene
LDP65_RS16340	pilD	3619890..3620759 (+)	870	WP_126606905.1	A24 family peptidase	Machinery gene
LDP65_RS16345	coaE	3620811..3621410 (+)	600	WP_126606903.1	dephospho-CoA kinase	-
LDP65_RS16350	zapD	3621448..3622188 (+)	741	WP_126606901.1	cell division protein ZapD	-
LDP65_RS16355	yacG	3622258..3622452 (+)	195	WP_126606900.1	DNA gyrase inhibitor YacG	-
LDP65_RS16360	mutT	3622544..3622957 (-)	414	WP_126606898.1	8-oxo-dGTP diphosphatase MutT	-
LDP65_RS16365	rplS	3623115..3623468 (-)	354	WP_101112478.1	50S ribosomal protein L19	-
LDP65_RS16370	trmD	3623510..3624253 (-)	744	WP_126606897.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
LDP65_RS16375	rimM	3624280..3624834 (-)	555	WP_101112480.1	ribosome maturation factor RimM	-
LDP65_RS16380	rpsP	3624860..3625108 (-)	249	WP_101112481.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32391.40 Da
• Isoelectric Point: 7.5482

>NTDB_id=90089 LDP65_RS16340 WP_126606905.1 3619890..3620759(+) (pilD) [Vibrio penaeicida strain TUMSAT-OK1]
MDAFHYYPWLFPLMAAVFGLVIGSFLNVVIYRLPRMMENEWRQECADSFPEYNIAPPTEKLTLSVPRSTCQKCNTQIRIR
DNVPVLSWLLLRGKCRACGTAISARYPLIELLTAGLSFAVANYFGFSYFSIALLFFTFVLIAATFIDFDTLLLPDQLTLP
LMWAGIALSLFEISPVSLTDSVIGAMAGYLCLWSVYYLFKLLTGKEGMGFGDFKLLAALGAWLGWQSLPIIILMSSLVGV
VFGVIQLRLQKKGIEQAFPFGPYLAIAGWVTLLFGKDITSWYFSHFLGI

Nucleotide

• Length: 870 bp

>NTDB_id=90089 LDP65_RS16340 WP_126606905.1 3619890..3620759(+) (pilD) [Vibrio penaeicida strain TUMSAT-OK1]
ATGGACGCTTTTCACTACTACCCTTGGCTGTTTCCGTTGATGGCTGCTGTATTTGGGTTGGTCATTGGTAGTTTTTTGAA
TGTCGTGATTTACCGTCTTCCAAGAATGATGGAAAACGAATGGCGACAAGAGTGTGCTGACTCTTTTCCTGAGTACAATA
TTGCGCCTCCAACAGAGAAGCTCACCTTAAGCGTCCCACGTTCTACTTGTCAAAAGTGCAATACACAAATCAGAATTCGG
GATAATGTCCCAGTGCTCAGCTGGTTACTTCTACGCGGTAAATGTCGCGCTTGCGGCACTGCGATCTCAGCTCGTTACCC
TCTTATCGAACTGCTTACCGCAGGTCTCAGCTTTGCTGTTGCAAACTATTTCGGGTTCAGTTATTTCTCTATTGCCCTTC
TATTTTTTACTTTTGTGCTTATCGCAGCCACTTTCATTGATTTCGACACTTTACTTCTCCCCGACCAACTCACCTTACCG
CTTATGTGGGCAGGGATAGCGCTTTCGCTCTTTGAAATCAGCCCTGTATCACTCACTGATTCCGTGATCGGTGCAATGGC
GGGTTACTTGTGTTTATGGAGTGTTTATTACCTGTTTAAGCTGCTTACTGGCAAAGAAGGGATGGGGTTTGGCGATTTCA
AATTACTTGCGGCACTCGGAGCTTGGTTGGGTTGGCAAAGTTTGCCCATTATAATCCTGATGTCATCACTAGTGGGTGTT
GTGTTTGGCGTGATTCAGCTAAGATTGCAGAAAAAAGGCATCGAACAAGCCTTCCCTTTTGGTCCTTACCTTGCCATCGC
TGGTTGGGTTACCCTATTGTTTGGAAAAGACATCACAAGTTGGTATTTTTCACATTTCCTTGGCATTTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.471	100	0.765
pilD	Vibrio cholerae strain A1552	71.181	99.654	0.709
pilD	Acinetobacter nosocomialis M2	53.333	93.426	0.498
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Neisseria gonorrhoeae MS11	46.263	97.232	0.45